Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05150 334 / 8e-111 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 143 / 5e-37 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 132 / 1e-33 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 129 / 1e-32 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 120 / 4e-29 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 120 / 6e-29 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 117 / 6e-28 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 110 / 3e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 107 / 4e-27 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT2G35050 113 / 1e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041100 [exp] 610 / 0 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 149 / 4e-40 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 144 / 2e-38 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 136 / 9e-35 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 132 / 7e-33 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.002G108800 [exp] 127 / 1e-32 AT5G09620 146 / 3e-39 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 128 / 5e-32 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 128 / 8e-32 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 115 / 9e-30 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002588 [exp] 418 / 4e-144 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 405 / 8e-139 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 162 / 8e-45 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 144 / 1e-40 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 129 / 4e-33 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 127 / 5e-33 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 129 / 5e-32 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10010753 [exp] 118 / 8e-32 AT5G09620 182 / 5e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019577 [exp] 126 / 5e-31 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 119 / 3e-29 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.004G032200.2 pacid=42793763 polypeptide=Potri.004G032200.2.p locus=Potri.004G032200 ID=Potri.004G032200.2.v4.1 annot-version=v4.1 ATGTCGTCCCTGCATCCATCAGAGCTGGATTCAGTCGCCACAGATTCTGTAGCCTCCTCTCCTCGGTCCGATTATCACTCGTTGCATGATCCACGCGTGC GCTTCATGTGCAGCTTCGGAGGTAAAATTCTCCCCCGCCCTCACGACAATCAGCTCCGATATGTTGGTGGTGACACTCGCATAGTTGCTGTCCATCGCTC CACAACTTTCTCTACTCTCATCACTAAATTATCAAAATTGTCAGGAATTGTTAACTTGAGTGTCAAGTATCAACTACCAAATGAAGATCTTGATGCTTTG ATATCTGTAACAACTGACGAGGATGTTGAGAACATGATGGATGAATATGATCGTGTTTTACAAAATCAAAACCCCCGTTCGGCTCGGCTTAGGCTATTCT TGTTCTCTACAGAAAATGAGGAGTCATCAAGAGCAAGTAGTATCAGTTCACTTCTTGACGGATCAACTAACCGTGAAAACTGGTTTTTTGATGCTCTTAA TTCCGGCGCTAGGAGGCTTGAACGTGGAAGGTCTGAGGCTTCTTCAATTATTTCTGAAGTACCAGATTATCTATTCGGGTTGGAGAATTCGGATGAGACC AAACAGAAGTCCCGTTTCGTTATGAACGATAATGTTTCAGCTTCCGATCCGGGTTCTCCTGCCCCGGTTGTTTCTTCCCCGTATTGCTCAACTTCATCGG TTGTGCCTACTATGCCTTCAATTCCGGATCTTCCACCTGTTAAGACCAAACCCGATTACCCAGATCCGATAACAGTACAGGTGAAGCAGACACCCTTTGA GGGTTATTCTGAACCAATGGAGCCACCACCGATGACACAACCAACCGGGTATCCGGGTAACCCAGTCATGCATTATATTCCGGATTCTCATTATTCTGGT GCTCCAGTACAACAAATGCCGGTTTATTATGTTCAGGGTACAATTCCACCAGGGAATGTTCAAATTCGCTCCCCATATGCTCAACAATACCCGATTGCAA CTGGGCAAATGCCAATCCGATACCACCAAGCTGTGCAAGGAATGGGTCAAGTGTATAGTGGAATGACAATGAGGCCTGTTGCGGCCATGGATCCGTATGA TGGTGCTAGAGTTGTTTCTGATGGGGTGAATCAACAGTTTTATTACGGAGTTCGGAATGCAAGCACGGGTATGGTTCAAGGGTATCCGGGCATGGTTATC CCGGGTGGGGAGGATATGAAAAGGACCGCATCCGATGTAAATCCGGGTCGGGTATCCCAGTAA
AA sequence Show only first row Show all	>Potri.004G032200.2 pacid=42793763 polypeptide=Potri.004G032200.2.p locus=Potri.004G032200 ID=Potri.004G032200.2.v4.1 annot-version=v4.1 MSSLHPSELDSVATDSVASSPRSDYHSLHDPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVHRSTTFSTLITKLSKLSGIVNLSVKYQLPNEDLDAL ISVTTDEDVENMMDEYDRVLQNQNPRSARLRLFLFSTENEESSRASSISSLLDGSTNRENWFFDALNSGARRLERGRSEASSIISEVPDYLFGLENSDET KQKSRFVMNDNVSASDPGSPAPVVSSPYCSTSSVVPTMPSIPDLPPVKTKPDYPDPITVQVKQTPFEGYSEPMEPPPMTQPTGYPGNPVMHYIPDSHYSG APVQQMPVYYVQGTIPPGNVQIRSPYAQQYPIATGQMPIRYHQAVQGMGQVYSGMTMRPVAAMDPYDGARVVSDGVNQQFYYGVRNASTGMVQGYPGMVI PGGEDMKRTASDVNPGRVSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Potri.004G032200 [exp]	0	1
AT2G45720			ARM repeat superfamily protein...		Potri.014G076500 [exp]	4.47	0.6938
AT4G40070			RING/U-box superfamily protein...		Potri.008G025300 [exp]	5.47	0.6834
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	20.29	0.6823
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.010G216200 [exp]	27.56	0.6685
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	29.49	0.6728
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.001G442600 [exp]	35.14	0.6240
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	35.72	0.6520
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.002G230800 [exp]	43.47	0.6712
					Potri.002G214450 [exp]	48.83	0.5478
					Potri.005G051150 [exp]	49.30	0.6473

Compare expression of checked genes

Potri.004G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.