Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05120 586 / 0 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05140 563 / 0 Nucleoside transporter family protein (.1) AT4G05110 558 / 0 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05130 534 / 0 ATENT4 equilibrative nucleoside transporter 4 (.1) AT1G61630 474 / 2e-166 ATENT7 equilibrative nucleoside transporter 7 (.1) AT3G09990 458 / 2e-160 Nucleoside transporter family protein (.1) AT1G02630 134 / 3e-35 Nucleoside transporter family protein (.1.2) AT1G70330 134 / 6e-35 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041112 [exp] 660 / 0 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 628 / 0 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.019G118400 [exp] 580 / 0 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 492 / 8e-174 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.012G058900 [exp] 128 / 1e-32 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.018G130000 [exp] 120 / 6e-30 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.006G068100 [exp] 109 / 3e-26 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 64 / 5e-12 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002589 [exp] 598 / 0 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018413 [exp] 598 / 0 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 546 / 0 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 545 / 0 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 521 / 0 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 397 / 8e-137 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10030104 [exp] 127 / 1e-32 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10029162 [exp] 126 / 4e-32 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10013002 [exp] 125 / 9e-32 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10002590 [exp] 103 / 5e-27 AT4G05130 97 / 2e-25 equilibrative nucleoside transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF01733 [poplar] [flax] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Potri.004G032300.2 pacid=42795573 polypeptide=Potri.004G032300.2.p locus=Potri.004G032300 ID=Potri.004G032300.2.v4.1 annot-version=v4.1 ATGACTATTGCAAATGGAAAAATTGATGCTCCTACTCCAACAAGACCTGGGGGAAAAACTAAAGGAATTGTAGTTTGCTGGTTTCTTGGACTAGGGTCTC TGATCTCATGGAACAGTATGCTGACCATAGGAGATTACTACTATACTTTGTTCCCGAAATACCATCCTTCAAGGGTACTTACCCTTGTTTATCAACCATT TGCAATCGGAACAATGGCAATACTGGCATATAATGAGGCAAAGATCAATACTAGAAAGCGGAACATAGCCGGTTACATACTCTTTACTGCAAGTACTCTC ATGCTTATGGTTGTGGATTTGGCCACGTCAGGAAGAGGAGGCGTTGGACCTTTTATTGGTATATGTGCAATTGTTGCTGCTTTTGGAGTTGCAGATGCTC ATGTTCAAGGTGGGATGGTTGGAGACATGGCTTTCATGTGTCCAGAATTCATGCAGTCTTTCTTTGCTGGGTTGGCTGCATCAGGAGCTCTGACCTCTGG TTTGAGATTGATCACAAAAGCAGCATTTGATAAATCTAAAAATGGTCCTCGCAAGGGAGTTATGCTATTTCTAGGAATTTCCACTTTCGCGGAGTTCCTA TGCGTGTTGCTGTATGCATATCTCTTTCCTAAACTGCCAATAGTGAAGTACTACCGCTCAAAGGCAGCCTCTGAAGGATCAAAGACTGTTTCAGCTGATC TTGCTGCTGCTGGCATCCAAACACCAGCAGACCATCAAGCTTCTGATGTTGCCAAATCTCCGGAGCGATTAAGCAACAAACAACTATTGTTCCAGAATAT AGATTATGCACTTGACCTATATTTGATATACGTGCTGACATTGTCGATTTTCCCGGGATTCTTGTATGAAAATACTGGTGAACACCAGTTGGGAACATGG TACCCTCTTGTTCTAATCGCAGTGTACAATGTGCTGGATCTCATCTCAAGATACCTCCCCCTTGTTCCATGGTTGAAGTTGGAGTCCAGAAAGGGCCTCA TGATTGCAATTCTCTCTCGTTTCCTACTCGTTCCTGCATTCTACTTCACTGCGAAATATGGTGATCAAGGATGGATGATCTTTCTCGTTTCTTTCTTGGG ACTAACAAATGGCTATCTCACTGTCTGTGTCCTAACAATTGCACCAAGAGGCTACAAGGGGCCTGAGGCAAATGCACTGGGCAATTTACTTGTGCTATGT TTATTGGGTGGCATATTTTCAGGGGTTGCCCTTGATTGGCTTTGGCTCATAGGCAAAAAGAATGCCTTCTAG
AA sequence Show only first row Show all	>Potri.004G032300.2 pacid=42795573 polypeptide=Potri.004G032300.2.p locus=Potri.004G032300 ID=Potri.004G032300.2.v4.1 annot-version=v4.1 MTIANGKIDAPTPTRPGGKTKGIVVCWFLGLGSLISWNSMLTIGDYYYTLFPKYHPSRVLTLVYQPFAIGTMAILAYNEAKINTRKRNIAGYILFTASTL MLMVVDLATSGRGGVGPFIGICAIVAAFGVADAHVQGGMVGDMAFMCPEFMQSFFAGLAASGALTSGLRLITKAAFDKSKNGPRKGVMLFLGISTFAEFL CVLLYAYLFPKLPIVKYYRSKAASEGSKTVSADLAAAGIQTPADHQASDVAKSPERLSNKQLLFQNIDYALDLYLIYVLTLSIFPGFLYENTGEHQLGTW YPLVLIAVYNVLDLISRYLPLVPWLKLESRKGLMIAILSRFLLVPAFYFTAKYGDQGWMIFLVSFLGLTNGYLTVCVLTIAPRGYKGPEANALGNLLVLC LLGGIFSGVALDWLWLIGKKNAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032300 [exp]	0	1
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.011G103900 [exp]	2.00	0.9252
AT1G62810			Copper amine oxidase family pr...		Potri.001G118200 [exp]	2.44	0.9014
AT2G20500			unknown protein		Potri.002G038400 [exp]	3.16	0.9051
					Potri.003G154150 [exp]	10.19	0.8632
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Potri.014G139300 [exp]	11.48	0.8653
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Potri.012G031400 [exp]	11.95	0.8750
AT2G46980			unknown protein		Potri.002G186200 [exp]	12.36	0.8866
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222300 [exp]	14.69	0.8899
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	16.37	0.8960
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.013G144300 [exp]	19.62	0.8770	10,Pt-DFL2.2

Compare expression of checked genes

Potri.004G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.