Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21430 523 / 9e-170 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT4G00990 478 / 7e-154 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 368 / 2e-111 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT1G62310 336 / 4e-100 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 322 / 3e-95 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 197 / 1e-51 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT2G22840 54 / 3e-07 GRF ATGRF1 growth-regulating factor 1 (.1) AT4G37740 54 / 6e-07 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G13960 51 / 3e-06 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 50 / 4e-06 GRF ATGRF6 growth-regulating factor 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041400 [exp] 1555 / 0 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.004G006200 [exp] 491 / 6e-156 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G091200 [exp] 472 / 2e-148 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.011G009700 [exp] 460 / 4e-144 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 410 / 9e-127 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.015G012800 [exp] 322 / 3e-91 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 292 / 3e-82 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G027000 [exp] 220 / 3e-60 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G026950 [exp] 56 / 2e-08 AT1G09060 167 / 4e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020084 [exp] 978 / 0 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10006741 [exp] 879 / 0 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10020033 [exp] 480 / 1e-153 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10002391 [exp] 440 / 2e-136 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 407 / 4e-126 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10017092 [exp] 400 / 4e-123 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 399 / 7e-123 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10027890 [exp] 383 / 1e-115 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 215 / 3e-58 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 172 / 3e-46 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.004G032700.4 pacid=42793953 polypeptide=Potri.004G032700.4.p locus=Potri.004G032700 ID=Potri.004G032700.4.v4.1 annot-version=v4.1 ATGATAAAAAATCCCTTCTCACTCTCATTCCCTCACTTCACTCTATCTAATAAATCCAAACTTTCTGTCACTTTCCCGAGAAAATCAGGATTTTCCGGGA AAATTTCCAAACTTTCTCTTTTAATGGAGCCGCTACCGGACCATCTCCGGTGCAAGAGGACAGACGGCCGGCAATGGCGGTGCAACCGGCGGGTGATGGA GGATAAGAAGCTCTGTGAAATTCATCACCTTCAGGGCCGCCATAGGCAGTATAGGAGGAAAGTGCCCGAGACTTTGAAGTTGCAGAGAAAGAAGAGCAAG AAATCATCAGCATCAAGTTCTAATTTTGAAGCCCTAAGTAGGGTTTCTTTGAAAGAGGGCAAATTAGGGAAATTTAAGAAGAAAGGAAAGAAATTGAAGA GGGGAGATTTACAGCTGGATTTGATAAGGATGGTTTTACAGAGAGAAATGGAGAAGAGAAAGAATAAGAAAACGAAAGGGTTTTCAGAGAAAGAGAGTGT TAATAATGGTGAAGGTAATGATAATGTGAATGATTGTAGTGGCAGTGATAGTGAAGAAGAAGGTGAAGGGGAAGAGTTAATGAGAGATTTGCCAAATGGG TTCATGGCAATATCACCTGCCAAGAATTTTGGGAATGGCAATGTGGGTTCTTGTTCTGGTTCACATGTTGACGTTAAGGTTGGAGGGGGTGGTTTCAATG GGGTTAATACTGCTAGAAGATGTTTTAGGTCTAAAAATATTGAGCCAATGCCAGTTGGGAAATTACAGGTTTTGCCAAATAAGAGGGATGCAGTGAGATT GAGGAAGGGGAAGAGGAAGTGCCATTGGTGTAGGAGTGGATCAAGGACATTGATTAGGTGTTTGAGTTGTCGAAAAGAGTTTTATTGCTTGTGTTGCATC AAAGAGCAGTATTTAGAGACACAAGAAGATGTTAGGATGAAATGTCCAGTGTGTCGTAGAACTTGCAGCTGTAAGGCCTGCTCAGCAATTCAATGTAGGG ACATTGAATGTAAGGACCTGTCCAAGGAGAGAAGTAAAGTTGACAAGGTTCTGCATTTTCATTATTTAATCTGTATGCTTCTTCCTATACTGAAACAAAT AAATCAAGATCAGAGCATTGAGATAGAAATAGAAGCAAAAATAAAAGGCCTGAAGCCCACAGAAGTTCAAATCCAGCAGGCTGAAATCAGCTGCAATAAG CAATGTTGTTGCAATAATTGCAAGGCTTCCATAGTGGATTTCCATAGGACCTGCCCTGATTGTTCCTATAGCCTTTGCTTAAGTTGTTGTCAGGATATTT TTCATGGGAGCTTACATGGAAGTGTTAAAGGTCTTTTATGCAAATGCCCAAATGGAAGGAAAGCTTGTATATCTGGCAAGCAACTTTCAGAAATGAAATC ACTTTGTGCCACAAAGCTGAGTTATGGCAGCAGATTTCTTGGTTCTACATTCTCACCATGTCAGGGTGCTGCGCATTGTAATGGAAGTATACCTTGTCCC CCTAGAGAGTTTGGTGGTTGTGGTGGTAGCCTTCTTGATTTAAGTTGCATATTCCCCTTAAGTTGGACCAAAGAGCTGGAAGTGAGTGCAGAAGAATTAG TTGGCTGCTACGAGTTGCCAGAAACCTTGGATGTTTGCTCAAGTTGTTCATTATGTGTTGGGTTGGATTGTGAAACAAATGGGATTGAGCAGTTGCAAGA AGCAGCTGCAAGAGAAGATTCTAGCGATAACCTTTTATATTATCCAACCATTATGGATATTCGTGGTGATAACCTTGAACACTTTCAGAAGCACTGGGGC AGAGGTCAACCTGTAATTGTTCGTAATGTGCTTCAGAGTACATCTGATGTGAGCTGGGATCCAATGGTCATGTTCTGCAATTATCTTAAGAATAATGCTG CCAGATCTCAAAATGGGCAAGCTACAGATTGTTTGGACTGGTTTGAGGTAGAAATTGGTGTAAAACAGATGTTTATGGGGTCTTTTAAGGGTCTGACAAA TGGCAACATATGGCATGAGAAGCTAAAATTGAAGGGTTGGCTTTCTTCTAATTTATTCCAAGAACATTTTCCTGCCCATTACACTGACATCCTTCAGGCT CTACCACTTCCAGAATACATGGACCCCATCTCTGGTGTTCTAAACATTGCTGCAGAGTTGCCGCAGGAAACCTTGAAGCCTGATCTGGGTCCTTGTCTCT ATATATCATATGGAAGTGGTGAGAGTCTTGCACAGGCCGATTCTGTGACAAAATTGCGTTATAATTCATATGATGTGGTTAATATTTTGGCACATACAAC TGATGTCCCTGTATCTACAAAACAGCTTAATTACATAAGAAAGTTGATGACGAAGCACAAGGAACAGAATAAAGAGAGCAGTGAAGCAACTTTAAATGAG GAAAATATTGAAGTGGAATTGCATGATATGTTCAAAGAAGATATGCAAGTAAACAAGAAAGTTGCTAGAATATCTTGGTTCTCTGCTGCAACACATGAAG CTCATGCTTCGAGTCTGAAAGATCGAGAAATGTTTCATGATGGGGATTCAGATTCTGATTCTGACACTGATACTGATACTGAAGTATCAAAATTTTTCTT TGGACCTGTTAAAAGTTCAAGGACATCAGATAATCTTAAGTTTTATGGGAAGCACTCCGAGAGCTCCAATAATTTCAGAATGAAAAAACTCTCTGAGTCT TGTGGTGCCCAATGGGATGTCTTTCGTAGACAGGATGTTCCCAAGCTTGCAGAATACCTTAGAAGGCACTTTAATGAGTTCACTTACACATATGGCTTAC AAAAGCATATGGTTCATCCAATACTTGATCAGAATTTCTTTCTTGATGCATCTCATAAAATGAGACTTAAGGAGGAATTCAAAATTGAACCCTGGAGTTT TGAGCAACATGTTGGAGAAGCAGTGATTATTCCTGCTGGATGCCCTTACCAAATTAGGAATCTTAAGTCATGCGTCAGTGTGGTTTTGGACTTCCTCTCA CCAGAAAATGTTACTGAATGCATCCAGCTGATTGATGAGTTACGACAACTTCCAGAGAACCATAAAGCCAAAGTAGACAGTTTAGAGGTGAAGAAAATGG CATTGCACAGTATTAGTAGAGCAGTCAAAGAAATTCGTGAGCTTACATGCGCAGAGGCCAGCATGGATCTCAACGACTAA
AA sequence Show only first row Show all	>Potri.004G032700.4 pacid=42793953 polypeptide=Potri.004G032700.4.p locus=Potri.004G032700 ID=Potri.004G032700.4.v4.1 annot-version=v4.1 MIKNPFSLSFPHFTLSNKSKLSVTFPRKSGFSGKISKLSLLMEPLPDHLRCKRTDGRQWRCNRRVMEDKKLCEIHHLQGRHRQYRRKVPETLKLQRKKSK KSSASSSNFEALSRVSLKEGKLGKFKKKGKKLKRGDLQLDLIRMVLQREMEKRKNKKTKGFSEKESVNNGEGNDNVNDCSGSDSEEEGEGEELMRDLPNG FMAISPAKNFGNGNVGSCSGSHVDVKVGGGGFNGVNTARRCFRSKNIEPMPVGKLQVLPNKRDAVRLRKGKRKCHWCRSGSRTLIRCLSCRKEFYCLCCI KEQYLETQEDVRMKCPVCRRTCSCKACSAIQCRDIECKDLSKERSKVDKVLHFHYLICMLLPILKQINQDQSIEIEIEAKIKGLKPTEVQIQQAEISCNK QCCCNNCKASIVDFHRTCPDCSYSLCLSCCQDIFHGSLHGSVKGLLCKCPNGRKACISGKQLSEMKSLCATKLSYGSRFLGSTFSPCQGAAHCNGSIPCP PREFGGCGGSLLDLSCIFPLSWTKELEVSAEELVGCYELPETLDVCSSCSLCVGLDCETNGIEQLQEAAAREDSSDNLLYYPTIMDIRGDNLEHFQKHWG RGQPVIVRNVLQSTSDVSWDPMVMFCNYLKNNAARSQNGQATDCLDWFEVEIGVKQMFMGSFKGLTNGNIWHEKLKLKGWLSSNLFQEHFPAHYTDILQA LPLPEYMDPISGVLNIAAELPQETLKPDLGPCLYISYGSGESLAQADSVTKLRYNSYDVVNILAHTTDVPVSTKQLNYIRKLMTKHKEQNKESSEATLNE ENIEVELHDMFKEDMQVNKKVARISWFSAATHEAHASSLKDREMFHDGDSDSDSDTDTDTEVSKFFFGPVKSSRTSDNLKFYGKHSESSNNFRMKKLSES CGAQWDVFRRQDVPKLAEYLRRHFNEFTYTYGLQKHMVHPILDQNFFLDASHKMRLKEEFKIEPWSFEQHVGEAVIIPAGCPYQIRNLKSCVSVVLDFLS PENVTECIQLIDELRQLPENHKAKVDSLEVKKMALHSISRAVKEIRELTCAEASMDLND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Potri.004G032700 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Potri.015G043501 [exp]	1.00	0.8550
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	5.83	0.7434
AT5G61140			U5 small nuclear ribonucleopro...		Potri.015G056501 [exp]	9.48	0.7922
AT5G03780		TRFL10	TRF-like 10 (.1)		Potri.002G005600 [exp]	12.00	0.7979
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	18.00	0.8116
AT1G21651			zinc ion binding (.1)		Potri.019G066500 [exp]	19.44	0.7777
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	21.56	0.8112	SDG904
					Potri.005G043750 [exp]	24.59	0.7912
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	27.27	0.7450
					Potri.003G148601 [exp]	31.08	0.8054

Compare expression of checked genes

Potri.004G032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.