Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11390 860 / 0 Protein kinase superfamily protein (.1) AT1G61640 762 / 0 Protein kinase superfamily protein (.1.2) AT3G07700 131 / 1e-31 Protein kinase superfamily protein (.1.2.3) AT1G79600 115 / 1e-26 Protein kinase superfamily protein (.1) AT5G24970 112 / 1e-25 Protein kinase superfamily protein (.1.2) AT5G64940 110 / 6e-25 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT4G24810 107 / 2e-24 Protein kinase superfamily protein (.1.2.3) AT1G65950 105 / 8e-24 Protein kinase superfamily protein (.1) AT5G50330 102 / 6e-23 Protein kinase superfamily protein (.1.2) AT1G71810 102 / 2e-22 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041500 [exp] 1140 / 0 AT1G11390 879 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 127 / 2e-30 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G075100 [exp] 106 / 9e-24 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.005G083200 [exp] 105 / 2e-23 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.002G061000 [exp] 103 / 7e-23 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 102 / 3e-22 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.015G091000 [exp] 98 / 2e-21 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G014000 [exp] 99 / 3e-21 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 94 / 8e-20 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018416 [exp] 882 / 0 AT1G11390 818 / 0.0 Protein kinase superfamily protein (.1) Lus10002591 [exp] 856 / 0 AT1G11390 796 / 0.0 Protein kinase superfamily protein (.1) Lus10037869 [exp] 702 / 0 AT1G11390 692 / 0.0 Protein kinase superfamily protein (.1) Lus10006363 [exp] 129 / 6e-31 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 128 / 2e-30 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 107 / 7e-24 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10020103 [exp] 106 / 1e-23 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 103 / 1e-22 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10035853 [exp] 102 / 3e-22 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10032628 [exp] 98 / 3e-21 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.004G032800.2 pacid=42794052 polypeptide=Potri.004G032800.2.p locus=Potri.004G032800 ID=Potri.004G032800.2.v4.1 annot-version=v4.1 ATGTCCAGGTTTTTGACGATTGGAAATATTAAAAAAGTGGCACGGTTGATTTTCAGTAAACAGAAAAGTAGTAGTAATCAATTATTGGAAGTAAAAAAGT ATGGGACAGTAGTTTCAGTTGGTTTGCATTTACCGCAATTTAGATATTACTCGCAATATAGCTTTCCGAGTAGAGGGTATTCGTCTTTTGCATTGTACAA TGTTAAAGAGCAGTTTGGACGGAGGTGTTTTACAAGTTGTTATTCATCTACGAGTGATGTGGTGACACGCAATGCCCAGCTTGCTTGGAAAAGGCTATGC AGGAAAGGTTCTGCTAATGGCTGGAGTTTTCCTCGGATAAGTAGGATAGCTCAAGCAGTTAGCTTGGCTTTGACACGGTCTCATTTGGTGGTTCCCAGTG CTTTAGCATTGACATGTGGGCAGGTGGCATGGGCACAAAGAACGTTGGTGGAATCGGATTTTTATCCGAATTCTTTGTATATGCGTGCACAAGATGGGCA TGCTTATGTCACGTTGTTAGTATCTGCTGTTGTAGATGCATTTGTGTTGTTAGTGAGAGCTATATATTTAGCAATTTTGTTCTCGCCCAGCATGATGATG GCTCCATTTGCTGATTCTTGTGGACCAGAGTTTAGGAAAATATGGCTTCATGTTGTTCATCGGACACTGGAGAAAGCAGGTCCAGCATTTATAAAATGGG GTCAATGGGCAGCTACCCGGCCAGATCTATTCCCTAGAGATTTATGCACCAAGCTTTCAGAGCTGCATTCCAAAGCTCCTGAACATAGTTTTGCCTACAC GAAGAAAACTATTGAAAGAGCATTTGGTCGCAAGCTTTCTGAAATCTTTGAGGATTTTGAAGAAGTTCCTGTAGCATCTGGAAGTATTGCTCAAGTGCAT CGGGCCTCTCTGAGATTTCGTTACCCTGGTAAAAAACAGACAAAGCCTACCATAGTTGCTGTAAAGGTTAGACATCCTGGTGTTGGTGAATCAATTAGAA GAGACTTTATGATAATAAACTTGGTTGCAAAGATATCAACATTTATTCCAACTTTGAATTGGCTGAGACTGGATGAGAGCCTGCAACAGTTTGGTGTTTT CATGATGTCTCAAGTGGATCTTGCAAGGGAAGCTGCGCAATTAAGCCGCTTTATATATAACTTCCGAAGGTGGAAAGATGTTTCTTTTCCCAAGCCTGTG TATCCACTTGTGCATCCTGCTGTTTTGGTGGAATCATATGAGCAAGGAGAAAGTGTCTCGCACTATGTAGATGACCTTGAAGGTCATAATCGAATTAAAA GTGCCCTTGCTCACATTGGAACTCATGCACTTCTGAAAATGCTTCTGGTGGACAACTTTATACATGCAGACATGCATCCTGGAAATATCCTTGTCCGGCT TTCTAAGAACAGTTCTTCTCGGAAACGGCTCTTTAAATCAAAGCCTCATGTCATTTTCCTCGATGTTGGCATGACTGCTGAACTTTCTCAGGGTGATCGC ATTAATTTGATCAATTTTTTTAAAGCAGTAGCCACCCGGGATGGCCGCACTGCAGCAGAATCTGCACTAAGCTTGTCAAAGCGACAAAACTGCCCAAATC CAAAGGCCTTTATTGAAGAAGTGGAAGAGTCCTTCACTTTCTGGGGTACTCCTGAAGGTGATCTAGTCCATCCTGCAGATTGCATGCAACAATTACTTGA GAAAGTCAGGCGTCATAGAGTTAATATTGATGGCAATGTTTGCACTGTCATGGTCACAACCTTGGTTCTTGAGGGCTGGCAACGGAAGCTAGATCCAGGA TACAATGTGATGCAGACATTACAAACACTGCTTCTTCGAGCTGACTGGGCTAAGTCTCTTTCCTATACAATTGATGGGTTGATGGGCCCATAA
AA sequence Show only first row Show all	>Potri.004G032800.2 pacid=42794052 polypeptide=Potri.004G032800.2.p locus=Potri.004G032800 ID=Potri.004G032800.2.v4.1 annot-version=v4.1 MSRFLTIGNIKKVARLIFSKQKSSSNQLLEVKKYGTVVSVGLHLPQFRYYSQYSFPSRGYSSFALYNVKEQFGRRCFTSCYSSTSDVVTRNAQLAWKRLC RKGSANGWSFPRISRIAQAVSLALTRSHLVVPSALALTCGQVAWAQRTLVESDFYPNSLYMRAQDGHAYVTLLVSAVVDAFVLLVRAIYLAILFSPSMMM APFADSCGPEFRKIWLHVVHRTLEKAGPAFIKWGQWAATRPDLFPRDLCTKLSELHSKAPEHSFAYTKKTIERAFGRKLSEIFEDFEEVPVASGSIAQVH RASLRFRYPGKKQTKPTIVAVKVRHPGVGESIRRDFMIINLVAKISTFIPTLNWLRLDESLQQFGVFMMSQVDLAREAAQLSRFIYNFRRWKDVSFPKPV YPLVHPAVLVESYEQGESVSHYVDDLEGHNRIKSALAHIGTHALLKMLLVDNFIHADMHPGNILVRLSKNSSSRKRLFKSKPHVIFLDVGMTAELSQGDR INLINFFKAVATRDGRTAAESALSLSKRQNCPNPKAFIEEVEESFTFWGTPEGDLVHPADCMQQLLEKVRRHRVNIDGNVCTVMVTTLVLEGWQRKLDPG YNVMQTLQTLLLRADWAKSLSYTIDGLMGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11390			Protein kinase superfamily pro...		Potri.004G032800 [exp]	0	1
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	3.46	0.7377
AT5G05380		PRA1.B3	prenylated RAB acceptor 1.B3 (...		Potri.019G124100 [exp]	6.00	0.7398
AT3G02010			Pentatricopeptide repeat (PPR)...		Potri.002G237100 [exp]	6.48	0.7125
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	14.83	0.7356
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	15.49	0.7436
AT3G02468		CPuORF9	conserved peptide upstream ope...		Potri.004G106750 [exp]	18.00	0.7400
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.014G047200 [exp]	18.65	0.7040
AT3G59800			unknown protein		Potri.007G139900 [exp]	18.73	0.6975
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.001G215400 [exp]	20.83	0.6660
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Potri.010G221500 [exp]	23.45	0.6769	PABAS

Compare expression of checked genes

Potri.004G032800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.