Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21450 358 / 3e-125 PapD-like superfamily protein (.1.2.3) AT5G54110 307 / 3e-105 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 296 / 1e-100 PapD-like superfamily protein (.1) AT3G60600 54 / 4e-08 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 53 / 6e-08 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT2G45140 51 / 2e-07 PVA12 plant VAP homolog 12 (.1) AT5G47180 48 / 2e-06 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G51270 48 / 4e-06 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT1G08820 46 / 2e-05 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT2G23830 42 / 0.0001 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041900 [exp] 409 / 2e-145 AT4G21450 359 / 2e-125 PapD-like superfamily protein (.1.2.3) Potri.011G126200 [exp] 310 / 2e-106 AT5G54110 288 / 5e-98 membrane-associated mannitol-induced (.1) Potri.019G116400 [exp] 308 / 1e-105 AT4G21450 270 / 1e-90 PapD-like superfamily protein (.1.2.3) Potri.013G147800 [exp] 308 / 1e-105 AT4G21450 266 / 5e-89 PapD-like superfamily protein (.1.2.3) Potri.001G408200 [exp] 306 / 9e-105 AT5G54110 322 / 3e-111 membrane-associated mannitol-induced (.1) Potri.002G144800 [exp] 59 / 3e-10 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.014G060900 [exp] 57 / 2e-09 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 57 / 3e-09 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 56 / 4e-09 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002595 [exp] 373 / 5e-131 AT4G21450 389 / 4e-137 PapD-like superfamily protein (.1.2.3) Lus10018420 [exp] 371 / 4e-130 AT4G21450 383 / 6e-135 PapD-like superfamily protein (.1.2.3) Lus10018534 [exp] 306 / 7e-105 AT4G21450 316 / 2e-108 PapD-like superfamily protein (.1.2.3) Lus10039757 [exp] 306 / 1e-104 AT4G21450 316 / 1e-108 PapD-like superfamily protein (.1.2.3) Lus10037873 [exp] 293 / 8e-100 AT5G54110 331 / 6e-115 membrane-associated mannitol-induced (.1) Lus10036495 [exp] 69 / 2e-13 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10010360 [exp] 64 / 6e-12 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 60 / 4e-10 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 60 / 7e-10 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 55 / 2e-08 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Potri.004G033500.1 pacid=42796531 polypeptide=Potri.004G033500.1.p locus=Potri.004G033500 ID=Potri.004G033500.1.v4.1 annot-version=v4.1 ATGGCCATAGCGGACCAGAGATCACCAACCGATAATACTCCCAGCAACAACAACAGTAAAGTGTGGGGATTCTTAAAGCTGCCGTTTTTAGGAGGAAGCA ACACTAATACGACACCCTCTTCTTCTACTACTAACACTCCTACTTCAACGATGATGATGATGCAGCAGCAACAGCAGCAGCAGCACCACCACCATAATCA CCAGCCCAACTCCCTAATCGAAGGATCCAATCCTCCTCTTGCTTCCAATTCTGTCTCTTCTGTTGCTAGATCGCTGTTGCCGACACGTCGTCGTCTTAAA CTCGATCCTTCTTCCAAGCTTTACTTTCCTTATGAACCTGGCAAGCAGGTTCGCAGTGCCATCAGGATTAAAAACACTTGCAAGTCACATGTAGCTTTTA AGTTTCAAACAACTGCACCGAAAAGCTGTTTCATGCGTCCTCCAGGGGCTATTCTTGCACCTGGGGAAAGTATCATAGCTACAGTCTTCAAGTTTATTGA ACTCCCAGAAATTAACGAGAAACCAATGGAGCAGAAGAGCAGGGTTAAATTTAAAATCATGAGCCTGAAGGTGAAAGGGGTCATGGACTATGTACCTGAG CTGTTTGATGAGCAGAAAGATCAAGTAGCAGTAGAGCAAATATTGCGGGTTTTTTTTCTAAATCCAGAGCGTCCTGGTCCTGCTTTGGAAAAGTTGAAGC GCCAGTTGGCTGATGCTGATGCAGCTCTTGAGGCACGCAAGAAACCTCCAGAAGATGCAGGTCCGAGGATTATTGGTGAAGGACTAGTGATAGATGAATG GAAAGAGCGAAGGGAAAGATACCTTGCTCGGCAGCAGGTTGAAGGAGTAGACTCGGTATAG
AA sequence Show only first row Show all	>Potri.004G033500.1 pacid=42796531 polypeptide=Potri.004G033500.1.p locus=Potri.004G033500 ID=Potri.004G033500.1.v4.1 annot-version=v4.1 MAIADQRSPTDNTPSNNNSKVWGFLKLPFLGGSNTNTTPSSSTTNTPTSTMMMMQQQQQQQHHHHNHQPNSLIEGSNPPLASNSVSSVARSLLPTRRRLK LDPSSKLYFPYEPGKQVRSAIRIKNTCKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFIELPEINEKPMEQKSRVKFKIMSLKVKGVMDYVPE LFDEQKDQVAVEQILRVFFLNPERPGPALEKLKRQLADADAALEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21450			PapD-like superfamily protein ...		Potri.004G033500 [exp]	0	1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	11.74	0.7496
AT1G43910			P-loop containing nucleoside t...		Potri.005G119200 [exp]	16.61	0.7525
AT5G39670			Calcium-binding EF-hand family...		Potri.004G122900 [exp]	34.64	0.7454
AT4G28300			Protein of unknown function (D...		Potri.013G131600 [exp]	35.28	0.7412
AT1G59650		CW14	Protein of unknown function (D...		Potri.017G074800 [exp]	40.07	0.6539
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	40.24	0.7397	CBP60.12
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.003G083900 [exp]	40.89	0.7372
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.004G220100 [exp]	41.07	0.7383
AT3G19970			alpha/beta-Hydrolases superfam...		Potri.007G075400 [exp]	49.44	0.7293
AT4G25360		TBL18	TRICHOME BIREFRINGENCE-LIKE 18...		Potri.015G131600 [exp]	52.12	0.7346

Compare expression of checked genes

Potri.004G033500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.