Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18990 297 / 1e-99 Pectin lyase-like superfamily protein (.1) AT3G24130 296 / 2e-99 Pectin lyase-like superfamily protein (.1) AT2G47280 278 / 6e-92 Pectin lyase-like superfamily protein (.1) AT2G19150 269 / 1e-88 Pectin lyase-like superfamily protein (.1) AT5G26810 251 / 3e-82 Pectin lyase-like superfamily protein (.1) AT3G17060 221 / 6e-70 Pectin lyase-like superfamily protein (.1) AT2G36710 206 / 2e-63 Pectin lyase-like superfamily protein (.1) AT2G21610 198 / 1e-60 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G19730 196 / 9e-60 Pectin lyase-like superfamily protein (.1) AT1G05310 191 / 1e-57 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012800 [exp] 441 / 2e-156 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1) Potri.013G008100 [exp] 370 / 2e-129 AT5G26810 256 / 3e-85 Pectin lyase-like superfamily protein (.1) Potri.017G054700 [exp] 284 / 3e-95 AT3G24130 378 / 2e-132 Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 223 / 3e-70 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 202 / 2e-62 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.018G068400 [exp] 202 / 4e-62 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G186100 [exp] 195 / 2e-59 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.006G186000 [exp] 195 / 2e-59 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 194 / 3e-59 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031421 [exp] 335 / 8e-107 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10016678 [exp] 301 / 6e-101 AT3G24130 357 / 3e-123 Pectin lyase-like superfamily protein (.1) Lus10007136 [exp] 293 / 2e-97 AT3G24130 348 / 2e-119 Pectin lyase-like superfamily protein (.1) Lus10000935 [exp] 272 / 5e-89 AT3G24130 313 / 4e-105 Pectin lyase-like superfamily protein (.1) Lus10010912 [exp] 285 / 1e-87 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10000936 [exp] 263 / 8e-87 AT3G24130 308 / 2e-104 Pectin lyase-like superfamily protein (.1) Lus10040541 [exp] 219 / 5e-69 AT3G17060 471 / 7e-168 Pectin lyase-like superfamily protein (.1) Lus10037774 [exp] 216 / 1e-67 AT3G17060 468 / 2e-166 Pectin lyase-like superfamily protein (.1) Lus10023560 [exp] 206 / 1e-63 AT2G21610 368 / 4e-127 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10004720 [exp] 206 / 2e-63 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Potri.004G033700.1 pacid=42794381 polypeptide=Potri.004G033700.1.p locus=Potri.004G033700 ID=Potri.004G033700.1.v4.1 annot-version=v4.1 ATGCAGCGTTCTCCATTTGTTTTCGTTATCACTTTGTTTATGACCATTTTTGTGGGTGTCTCTCAAGCTGTAAATTGTATACGAGGAACAGGTGGGTCTA AAGTTGCAAGGACCATAGTTGTTGATCCATCCGGCAAAGGGAATTTCAAAACAATTCAAGGTGCCATTGACTCCATTCCAGAAAATAACAACAACTGGAT CAAAGTTCAAGTCAATGCAGGCATCTACATAGAGCAAGTGAACATTCCGATCGAGAAACCATGTATTTTTCTCGAAGGAAACGGTCGCCGCCAAACCACA GTTACTTACAACGCACACCAAGACACTGCTGCTAGCGCTACATTTACCTCATTGCCAAGCAATATTGTAGTCAAGGGGATAACCTTCGAGAATTCATTTA ACCGTCGGTTGATACAAAATACCTACAATGGAATCAAATCACCTGGTGTATTACCAGCACTTTCAGCACGAATTTATGGTGATAAGTCTGCTTTCTATGA TTGTGCTTTTTTGGGTGTTCAAGATACATTGTGGGATGTCAATGGCCGCCATCACTTCTCCAATTGCTACATTGAAGGATCAGTAGATTTTATATATGGT GCTGGCCAATCTTTTTATGAGGGTTGTATAATAAATGTTACCGGTGGAGGTTTTATAACAGCTCAAGGCAAGGAGTTTCATAATGATACCAATGGTTTTG TATTTTCTCGTTGCTATGTTACTGGAGTTAAGGGTGTTAAAGCTTACCTTGGGAGGGCTTATAGAGGATATTCAACAGTAATATATTACAATACATATTT ATCTGACGTTGTACAACCTGAAGGGTGGTTTGCTTGGGATTATGTAGGGCATGAGGATAATATAACCTATATGGAGGCTAATTGTAAAGGACCAGGAGCA AACACTTTGAATCGTGTGAAATGGGAAAAGAAGCTTACGATACAACAGCTCAGTCGATTCTCAAAGTCATCCTTCATTGATCAAGATGGCTGGCTTACCA AACTACCTCTTTGA
AA sequence Show only first row Show all	>Potri.004G033700.1 pacid=42794381 polypeptide=Potri.004G033700.1.p locus=Potri.004G033700 ID=Potri.004G033700.1.v4.1 annot-version=v4.1 MQRSPFVFVITLFMTIFVGVSQAVNCIRGTGGSKVARTIVVDPSGKGNFKTIQGAIDSIPENNNNWIKVQVNAGIYIEQVNIPIEKPCIFLEGNGRRQTT VTYNAHQDTAASATFTSLPSNIVVKGITFENSFNRRLIQNTYNGIKSPGVLPALSARIYGDKSAFYDCAFLGVQDTLWDVNGRHHFSNCYIEGSVDFIYG AGQSFYEGCIINVTGGGFITAQGKEFHNDTNGFVFSRCYVTGVKGVKAYLGRAYRGYSTVIYYNTYLSDVVQPEGWFAWDYVGHEDNITYMEANCKGPGA NTLNRVKWEKKLTIQQLSRFSKSSFIDQDGWLTKLPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18990			Pectin lyase-like superfamily ...		Potri.004G033700 [exp]	0	1
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G298000 [exp]	10.19	1.0000
AT1G52900			Toll-Interleukin-Resistance (T...		Potri.001G403800 [exp]	11.95	1.0000
AT1G55790			Domain of unknown function (DU...		Potri.001G438200 [exp]	13.49	1.0000
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Potri.005G111800 [exp]	19.41	1.0000
					Potri.001G276804 [exp]	21.16	1.0000
AT5G44840			Pectin lyase-like superfamily ...		Potri.006G252900 [exp]	21.93	1.0000
					Potri.001G330250 [exp]	24.00	1.0000
					Potri.013G052950 [exp]	28.39	1.0000
					Potri.001G466250 [exp]	32.00	1.0000
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G249800 [exp]	32.86	1.0000

Compare expression of checked genes

Potri.004G033700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.