Plant FIBer expression Database

Potri.004G033800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61350 629 / 0 ARM repeat superfamily protein (.1)
AT2G45720 239 / 1e-71 ARM repeat superfamily protein (.1.2)
AT5G50900 231 / 2e-68 ARM repeat superfamily protein (.1)
AT1G01830 199 / 2e-56 ARM repeat superfamily protein (.1.2.3)
AT2G05810 193 / 3e-54 ARM repeat superfamily protein (.1.2)
AT4G16490 59 / 4e-09 ARM repeat superfamily protein (.1)
AT5G67340 51 / 2e-06 ARM repeat superfamily protein (.1)
AT3G01400 48 / 9e-06 ARM repeat superfamily protein (.1)
AT1G44120 45 / 0.0002 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1)
AT1G09270 44 / 0.0003 IMPA-4 importin alpha isoform 4 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G042300
[exp]
942 / 0 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1)
Potri.014G076500
[exp]
251 / 8e-76 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2)
Potri.002G153700
[exp]
236 / 4e-70 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2)
Potri.014G158700
[exp]
210 / 2e-60 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2)
Potri.012G104400
[exp]
205 / 1e-58 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1)
Potri.015G103700
[exp]
201 / 4e-57 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1)
Potri.002G224400
[exp]
198 / 4e-56 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2)
Potri.008G071600
[exp]
46 / 7e-05 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Potri.009G029600
[exp]
46 / 7e-05 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002598
[exp]
543 / 0 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1)
Lus10018423
[exp]
533 / 0 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1)
Lus10041369
[exp]
215 / 3e-62 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10036559
[exp]
208 / 1e-59 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10029995
[exp]
146 / 7e-38 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2)
Lus10035337
[exp]
141 / 7e-37 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2)
Lus10034933
[exp]
102 / 2e-25 ND 87 / 6e-21
Lus10016848
[exp]
105 / 1e-24 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2)
Lus10039047
[exp]
66 / 4e-11 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1)
Lus10010499
[exp]
56 / 6e-08 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G033800.1 pacid=42794405 polypeptide=Potri.004G033800.1.p locus=Potri.004G033800 ID=Potri.004G033800.1.v4.1 annot-version=v4.1
ATGGGACAAGAAAATCCAAAACAACACCAGATCTTTCAAGAATCTTCACCACCAAAGCGCAGTCTCAGGCAAGCTATTGAGGTTATTTCTTCTTTGATCT
CCTACTCTCTTCCAATTAAAGTTTTTGCAGTGAAATGGCAACTAATTAGAAACAAGCTAGAAGAGCTAAACTCAAGCTTAATTGCCATAGAGGATTGTGA
TTCAAGCCAGAATCCAATACTTTCAGGCATGGTGTCTGCTGTCTTAGCCTCTGCTAGTGACTGCTATGATCTTGCTAGGAGATGTGTGGATCTTTCATAC
AGCGGCAAGCTCTTGATGCAGAGTGATTTGGATGTAATGGTTGCAAAGTTTGATAGACATGTAAAGAATCTATCTGGGATTTGTACTGCAGGTATTTTGA
GTCAGGGTTTTGCCATTGTTGTGTCTAGACCTGGAGTCAATGCTTGCAAGGATGATATGAGGTTTTACGTTAGAGATCTGTTGACAAGAATGAAAATTGG
TGACTTAGAAATGAAGAGACAAGCTTTGGTCAATTTGTATGATGTTGTTGTTGAAGATGAGAAGTATGTGAAGATAATTGTTGAAGTTGGTGACTTAGTG
AATATATTGGTTAGTCTTCTTGATTCAATGGAAATGGAACTTCAACAAGATGCTGTAAAAGTTGTGGCAGTGATTTCGGGTTTTGATTCTTACAAGTCTA
TTTTGATTGGAGCTGGGATTATAGGGCCTTTGATCAGGGTTTTGGAGAGTCGCAGTGAAATAAGCAAGGAGGGTGCTGCAAGAAGTTTGCAAAAATTGAC
CCAGAATTCTGATAATGCCTGGTCAGTTTCAGCATATGGTGGTGTTACAGCTTTATTGAAAATATGTGCTAGTGTTGATTCCACAGCAGAACTTATTAGC
CCTGCTTGTGGGGTATTGAGAAATCTTGTTGGTGTTGATGAAATAAAGAGATTTATGATTGAAGAAGGTGCAGTTTCCACATTTATCAAGCTGGCAAGAT
CAAAAGATGAAGGTGTGCAGATAAGTTCCATTGAATTCCTTCAAAATATTGCATCTGGAGACGAATCAGTGAGGCAATCGGTGGTCAAAGAAGGCGGAAT
TCGGGCATTAGTACGCGTTTTTGATCCGAAAATCGCGTGTTCTTCAAAATCTAGAGAGATGGCATTAAGGGCAATTGAGAATCTATGTTTCTCTTCAGCT
AGTTATATCAGTGTGTTGATGAGTTATGGATTTATGGATCAGCTTCTTTTCTTCCTTCGGAATGGAGATGTTTTGGTTCAGGAATTGGCACTGAAAGCAG
CATTTAGGCTCTCTGGAACATCAGAGGAGACTAAAAAGGCAATGGGAGATGCTGGATTTATGTCAGAGTTTGTAAAATTTCTTGATGCAAAATCATTTGA
AGTTAGAGAAATGGCAGCTGTGGCACTCAACAGCCTGGTCTCAGTGCCTAAAAATCGTAAAATATTCGTGCAGGACGATCGCAATGTGGGTTTTCTTCTT
CAATTGCTTGACCAAGAAGAGACAAATTCAGGTAGCAAAAAGTTCTTGATCTCTATATTATTGTCCTTAACAAGTTGCAATAGTGGAAGAAAAAAGATTG
CCAATTCTGGTTATTTGAAGAACATAGAAAAACTTGCAGAAGCTGAAGTTTCTGATGCTAAAAGACTTGTCAGGAAGCTATCTACAAATAGATTCCGTAG
TATGTTAAATGGAATCTGGCATTCTTGA
AA sequence
>Potri.004G033800.1 pacid=42794405 polypeptide=Potri.004G033800.1.p locus=Potri.004G033800 ID=Potri.004G033800.1.v4.1 annot-version=v4.1
MGQENPKQHQIFQESSPPKRSLRQAIEVISSLISYSLPIKVFAVKWQLIRNKLEELNSSLIAIEDCDSSQNPILSGMVSAVLASASDCYDLARRCVDLSY
SGKLLMQSDLDVMVAKFDRHVKNLSGICTAGILSQGFAIVVSRPGVNACKDDMRFYVRDLLTRMKIGDLEMKRQALVNLYDVVVEDEKYVKIIVEVGDLV
NILVSLLDSMEMELQQDAVKVVAVISGFDSYKSILIGAGIIGPLIRVLESRSEISKEGAARSLQKLTQNSDNAWSVSAYGGVTALLKICASVDSTAELIS
PACGVLRNLVGVDEIKRFMIEEGAVSTFIKLARSKDEGVQISSIEFLQNIASGDESVRQSVVKEGGIRALVRVFDPKIACSSKSREMALRAIENLCFSSA
SYISVLMSYGFMDQLLFFLRNGDVLVQELALKAAFRLSGTSEETKKAMGDAGFMSEFVKFLDAKSFEVREMAAVALNSLVSVPKNRKIFVQDDRNVGFLL
QLLDQEETNSGSKKFLISILLSLTSCNSGRKKIANSGYLKNIEKLAEAEVSDAKRLVRKLSTNRFRSMLNGIWHS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61350 ARM repeat superfamily protein... Potri.004G033800
[exp]
0 1
AT4G37080 Protein of unknown function, D... Potri.005G136401
[exp]
169.36 0.7620

Potri.004G033800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.