Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12820 653 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G62980 651 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT3G26810 629 / 0 AFB2 auxin signaling F-box 2 (.1) AT4G03190 612 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT4G24390 570 / 0 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT5G49980 562 / 0 AFB5 auxin F-box protein 5 (.1) AT2G39940 314 / 1e-99 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 104 / 2e-23 F-box/RNI-like superfamily protein (.1) AT5G67250 76 / 2e-14 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G07550 64 / 1e-10 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042400 [exp] 1147 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 655 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 649 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.014G134800 [exp] 641 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 637 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 609 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 602 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.010G192900 [exp] 310 / 1e-97 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.008G064400 [exp] 308 / 5e-97 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020086 [exp] 975 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 974 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018426 [exp] 961 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 848 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 843 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 672 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10011260 [exp] 580 / 0 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035161 [exp] 563 / 0 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 478 / 3e-165 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011261 [exp] 350 / 7e-119 AT1G12820 241 / 4e-77 auxin signaling F-box 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.004G033900.4 pacid=42795204 polypeptide=Potri.004G033900.4.p locus=Potri.004G033900 ID=Potri.004G033900.4.v4.1 annot-version=v4.1 ATGGGTCCAAATCCAAAGATGAAAAGGGAATTTCTTGACTCAACAAGGTCATCACCATTCCCAGATGAAGTACTGGAACGAGTTCTTTCACTCTTGAAAT CACACAAAGATCGTAGCGCAGTGTCTTTAGTATGCAAGGACTGGTACAACGCAGAAAGCTGGTCAAGAACTCATGTTTTTATAGGGAACTGTTATTCAGT CTCTCCTGAAATTGTTGCACGTAGATTTCCAATAATTAAGAGTGTTACTCTTAAAGGGAAGCCAAGATTTTCTGATTTTAATCTAGTGCCTGAAAATTGG GGAGCTGATGTTCATCCTTGGCTTGTAGTTTTTGCAACGAAGTATCCGTTTTTGGAAGAGCTGAGGCTTAAGAGAATGGCTGTTAGTGATGAAAGTTTGG AGTTTTTGGCTGTTAATTTTCCTAATTTTAAGGTTCTTTCTCTGTTGAGCTGTGATGGGTTTAGTACTGATGGGCTTGCTGCTATTGCCACTCATTGCAA GAGTTTGACTCAGCTTGACATACAAGAGAATGGCATTGATGACAAGAGTGGTGGTTGGTTAAGCTGCTTCCCTGAAAACTTCACATCATTGGAAGTACTA AACTTTGCCAATCTGAATACTGATGTCAATTTCGATGCACTTGAGAGACTTGTAAGTAGGTGCAAGTCACTAAAGGTTCTGAAGGTCAACAAAAGTATTT CCTTGGAACACCTACAAAGGCTGTTAGTTTGTGCTCCACAATTAACAGAGCTTGGCACTGGTTCATTCACACCAGAGCTCACAACTCGTCAGTATGCGGA GCTTGAAAGTGCATTTAACCAGTGCAAGAATTTACATACCCTTTCAGGTTTATGGGAGGCAACAGCACTATATCTACCAGTTCTGTACCCTGTCTGTTCA AACTTGACTTTCTTAAACCTGAGCTATACTTTTCTGCAAAGTCTTGAACTTGCTAGTCTTCTCCGTCAATGTCCACGACTTAGACGCCTCTGGGTCCTGG ACACTGTGGGGGACAAAGGGCTGGAGGCTGTTGGATCCAACTGTCCATTGCTTGAGGAGCTCCGTGTCTTCCCTGCCGATCCCTTTGATGAGGAAATTAT CCACGGGGTGACTGAAGCAGGGTTTGTTGCTGTCTCTTATGGATGTCGAAGACTCCACTATGTTCTCTACTTTTGCCGGCAGATGACTAATGCTGCAGTA GCAACCATTGTGCAGAACTGCCCTGATTTCACCCACTTTCGTCTTTGCATAATGAATCCAGGCCAACCGGATTACTTGACAAATGAACCTATGGACGAGG CTTTTGGGGCTGTGGTGAGGACTTGCACTAAACTACAGAGGCTTTCTGTTTCAGGTCTCTTGACAGACCTGACATTTGAATATATTGGGCAGTATGCCAA AAATCTGGAAACTCTGTCTGTGGCTTTTGCGGGCAGCAGTGATAGGGGGATGCAGTGTGTGCTAGAAGGTTGTCCAAAGTTGAGGAAACTTGAGATAAGG GACTGCCCATTTGGAAATGCAGCACTTCTTTCAGGTTTGGAGAAGTACGAGTCTATGAGGTCACTCTGGATGTCAGCCTGCAATGTGACAATGAATGGCT GTCGGTTATTGGCAAGGGAGATGCCCAGATTGAATGTTGAAGTAATGAAAGAGGATGGAAGTGATGACTCTCAGGCTGATAAAGTTTATGTTTACCGTTC TGTTGCGGGGCCAAGAAGGGATGCTCCACCTTGTGTACTCACTCTCTCAGGTTTATAA
AA sequence Show only first row Show all	>Potri.004G033900.4 pacid=42795204 polypeptide=Potri.004G033900.4.p locus=Potri.004G033900 ID=Potri.004G033900.4.v4.1 annot-version=v4.1 MGPNPKMKREFLDSTRSSPFPDEVLERVLSLLKSHKDRSAVSLVCKDWYNAESWSRTHVFIGNCYSVSPEIVARRFPIIKSVTLKGKPRFSDFNLVPENW GADVHPWLVVFATKYPFLEELRLKRMAVSDESLEFLAVNFPNFKVLSLLSCDGFSTDGLAAIATHCKSLTQLDIQENGIDDKSGGWLSCFPENFTSLEVL NFANLNTDVNFDALERLVSRCKSLKVLKVNKSISLEHLQRLLVCAPQLTELGTGSFTPELTTRQYAELESAFNQCKNLHTLSGLWEATALYLPVLYPVCS NLTFLNLSYTFLQSLELASLLRQCPRLRRLWVLDTVGDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAV ATIVQNCPDFTHFRLCIMNPGQPDYLTNEPMDEAFGAVVRTCTKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFAGSSDRGMQCVLEGCPKLRKLEIR DCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRLLAREMPRLNVEVMKEDGSDDSQADKVYVYRSVAGPRRDAPPCVLTLSGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Potri.004G033900 [exp]	0	1
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.012G136200 [exp]	1.73	0.9140
AT1G77990		SULTR2;2, AST56	SULPHATE TRANSPORTER 2;2, STAS...		Potri.002G092400 [exp]	2.23	0.9273	AST56.1
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073316 [exp]	5.00	0.9066
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073566 [exp]	7.74	0.8939
					Potri.008G169450 [exp]	10.86	0.9146
AT1G70940		PIN3, ATPIN3	ARABIDOPSIS PIN-FORMED 3, Auxi...		Potri.008G129400 [exp]	12.44	0.8493	PIN3.2,PIN6
AT5G14410			unknown protein		Potri.001G342100 [exp]	16.52	0.9028
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.019G128200 [exp]	22.44	0.9026
					Potri.001G021300 [exp]	26.60	0.8996
AT1G03670			ankyrin repeat family protein ...		Potri.019G101500 [exp]	27.56	0.9023

Compare expression of checked genes

Potri.004G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.