Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05020 890 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 877 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 800 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G28220 741 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT2G29990 216 / 5e-63 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 211 / 4e-61 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT3G44190 60 / 2e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 57 / 1e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G08740 56 / 6e-08 NDC1 NAD(P)H dehydrogenase C1 (.1) AT5G03630 47 / 2e-05 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042500 [exp] 1045 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147400 [exp] 816 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147300 [exp] 799 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 793 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G036300 [exp] 243 / 8e-73 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 238 / 5e-71 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 208 / 3e-60 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.001G217800 [exp] 65 / 5e-11 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020087 [exp] 934 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10006737 [exp] 933 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10011259 [exp] 929 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018427 [exp] 819 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 753 / 0 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018540 [exp] 711 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039768 [exp] 704 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039769 [exp] 704 / 0 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10002599 [exp] 651 / 0 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002601 [exp] 620 / 0 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.004G034100.5 pacid=42794177 polypeptide=Potri.004G034100.5.p locus=Potri.004G034100 ID=Potri.004G034100.5.v4.1 annot-version=v4.1 ATGAACGGCTTGAGTTTATTTAAGAGAGCTTCTAGAGCTTTCGATGACTATCCTTCACTCGCTAAACTCATTGTCGTTTGCACCGTCAGTGGTGGGGGCT ATGTAGCATATGCAGATGCAAATTCATCGAATGGTGCACATGCTGTTGCACCACCTGTACCGGAGATCAGGAAAAAGAAGGTGGTGGTGATTGGAACTGG TTGGGCCGGAACCAGTTTCTTGAAGAAACTGAATAATCCCTCGTATGATGTTCAGGTGATATCACCTCGGAACTACTTTGCATTCACTCCTTTGTTACCA AGTGTTACGTGTGGTACGGTGGAGGCTCGTAGCATTGTCGAACCAATTCGTAGCATTGTCAGGAAGAAAAGTGTTAGCGTTAGTTACTGTGAAGCTGAAT GTTTCAAGATTGATGCAGAAAACAAGAAAGTTTATTGTCGACCTAATCCGGACTCCAGTATGAATGGGAAAGAAGAATTTGCTGTGGATTACGACTATCT CGTAATAGCCATGGGAGCCCGTCCGAACACATTCAACACACCCGGTGTAGTAGAGCATTGCAATTTCCTGAAGGAAGTTGAAGATGCTCAGCGGATCCGT CGTTCTGTTATTGATTCGTTTGAGAAGGCAAGTTTGCCGACTCTAAGTGATGAAGAGAGGAAGAGAATTCTTCATTTTGTAGTTGTTGGTGGTGGACCAA CAGGAGTGGAGTTTGCTGCTGAGCTTCATGATTTTGTCAATGATGATTTAGTCAAACTATATCCTGCAGCCAAAGATTTCGTACAAATAACAATTCTTGA AGCAGCAGATCATATTTTGAACATGTTTGACAAAAGAATCACAGATTTTGCAGAAAAGAAGTTCCATAGAGATGGCATCGATGTGAAGCTAGGGTCCATG GTTGTGAAAGTATCTGATAAAGAAATCTCTACTAAAGTAAGGGGGAATGGTGGTGAAATTACTGCCATACCATATGGAATGGTCGTCTGGTCAACTGGAA TTGGAACTCATCCTGTCATAAGGAGTTTTATGCAGCAAATTGGTCAGACTAATAGGCGTGCTTTAGCAACTGATGAATGGCTGCGAGTTGAGGGATGCAA TAGCATATATGCACTTGGTGATTGTGCTACAATTAACCAACGCAAAGTCATGGAGGATATTGCAGCAATATTTAAGAAGGCAGACAAGGACAATTCTGGA ACCCTAACAGTAAAAGAATTTCAAGAAGTCATTGATGACATTTGTGAAAGATATCCTCAAGTGGAGCTATATTTGAAGAACAAGAAAATGCGTGACATTG CTGATCTCTTGAAGATGGCTAAAGGAGATGTTGCAAAAGAAGCAATTGAACTGAATATTGAAGAGTTTAAGAAAGCCCTTTCTGAAGTTGATTCCCAGAT GAAGAATCTTCCAGCCACAGCTCAGGTTGCAGCTCAGCAAGGCACTTATCTTGCTAATTGCTTCAACCGTATGGAAGAGGCTGAAAAAAATCCTGAAGGT CCTATCAGGTTCAGGGAAGAAGGTCGCCATCGATTCCGTCCCTTTAGATACAAGCACTTAGGGCAATTTGCTCCATTGGGAGGAGAACAAACAGCAGCAC AGCTTCCTGGTGATTGGGTTTCAATTGGCCACAGCTCTCAGTGGCTTTGGTATTCTGTCTATGCAAGCAAGCTAGTCAGTTGGCGCACCAGGGCGTTGGT GATAACAGACTGGACAAGGCGTTCCGTCTTTGGAAGAGATTCCAGTCGCATTTGA
AA sequence Show only first row Show all	>Potri.004G034100.5 pacid=42794177 polypeptide=Potri.004G034100.5.p locus=Potri.004G034100 ID=Potri.004G034100.5.v4.1 annot-version=v4.1 MNGLSLFKRASRAFDDYPSLAKLIVVCTVSGGGYVAYADANSSNGAHAVAPPVPEIRKKKVVVIGTGWAGTSFLKKLNNPSYDVQVISPRNYFAFTPLLP SVTCGTVEARSIVEPIRSIVRKKSVSVSYCEAECFKIDAENKKVYCRPNPDSSMNGKEEFAVDYDYLVIAMGARPNTFNTPGVVEHCNFLKEVEDAQRIR RSVIDSFEKASLPTLSDEERKRILHFVVVGGGPTGVEFAAELHDFVNDDLVKLYPAAKDFVQITILEAADHILNMFDKRITDFAEKKFHRDGIDVKLGSM VVKVSDKEISTKVRGNGGEITAIPYGMVVWSTGIGTHPVIRSFMQQIGQTNRRALATDEWLRVEGCNSIYALGDCATINQRKVMEDIAAIFKKADKDNSG TLTVKEFQEVIDDICERYPQVELYLKNKKMRDIADLLKMAKGDVAKEAIELNIEEFKKALSEVDSQMKNLPATAQVAAQQGTYLANCFNRMEEAEKNPEG PIRFREEGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKLVSWRTRALVITDWTRRSVFGRDSSRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Potri.004G034100 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.012G055500 [exp]	1.41	0.8729
AT3G57810			Cysteine proteinases superfami...		Potri.010G234300 [exp]	1.41	0.8706
AT2G16900			Arabidopsis phospholipase-like...		Potri.009G136400 [exp]	13.56	0.8428
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Potri.008G067900 [exp]	14.31	0.7667	Pt-ATH9.2
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	17.66	0.8597	Pt-NAC2.1,NAC049
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022600 [exp]	21.33	0.8434
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.014G159000 [exp]	22.04	0.8610	Pt-ACO1.4
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	26.38	0.8462
AT5G47070			Protein kinase superfamily pro...		Potri.003G085300 [exp]	27.49	0.8236
AT5G14760		AO	L-aspartate oxidase (.1)		Potri.001G348600 [exp]	30.09	0.7829

Compare expression of checked genes

Potri.004G034100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.