Plant FIBer expression Database

Potri.004G034301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF13671 AAA_33 AAA domain
Representative CDS sequence
>Potri.004G034301.3 pacid=42794285 polypeptide=Potri.004G034301.3.p locus=Potri.004G034301 ID=Potri.004G034301.3.v4.1 annot-version=v4.1
ATGTCGTGGTTCAGTTGCGTTGAAGACGGACTTGTTCCTGAACAAGGCTGTAAGCCCTGGGCTTCAGCTCTTGATGATGGGAATGCAATAATGGGACCTA
ATTCTTCTGACATTAGTGATTGTGAAGTAATGATGATGGTGGGGTTGCCTGCTTCTGGTAAAACTACATGGGCAGAGAAATGGGCAGAAGAGTACCCTGA
GAAGCGTTTTGTGTTACTTGGAAGAAACCTTATTCTGGATGAAATGAAGGTTTGCCTTGTGGAACTCCTCGCATTCCACTACCTGCATCTCTTGCTCCAT
CACCAAGGTCCCCGTATTCCAATTTTCCTACTGGCATGCAGCAGCATTCTGGAGGATATAACCCTCCTCCTCAGAGAAACTGCCAACTTCCTTATAGTCT
TGCCATCCATTCCTCAAGACCTCGGAGATCTTACTTCCAAACTAAAGACTGGAAATCGAGAAGGCCAAGTTCTGGTTCATGCTGAACTGCAGATATTTTG
CAAACATGAACTTAATGAAGAGAATTCAAAGGGCCCCCCTTCAAAGATAATTTCTAGATTTTTGTAA
AA sequence
>Potri.004G034301.3 pacid=42794285 polypeptide=Potri.004G034301.3.p locus=Potri.004G034301 ID=Potri.004G034301.3.v4.1 annot-version=v4.1
MSWFSCVEDGLVPEQGCKPWASALDDGNAIMGPNSSDISDCEVMMMVGLPASGKTTWAEKWAEEYPEKRFVLLGRNLILDEMKVCLVELLAFHYLHLLLH
HQGPRIPIFLLACSSILEDITLLLRETANFLIVLPSIPQDLGDLTSKLKTGNREGQVLVHAELQIFCKHELNEENSKGPPSKIISRFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G034301
[exp]
0 1
AT1G05790 lipase class 3 family protein ... Potri.002G231450
[exp]
4.69 0.6805
AT3G54360 zinc ion binding (.1) Potri.001G036400
[exp]
4.79 0.7655
AT4G16144 AMSH3 associated molecule with the S... Potri.010G141100
[exp]
7.00 0.6907
AT5G20910 AIP2 ABI3-interacting protein 2, RI... Potri.006G217600
[exp]
9.00 0.7432
AT5G47180 Plant VAMP (vesicle-associated... Potri.001G152100
[exp]
12.96 0.7471
AT5G25110 CIPK25, SnRK3.2... SNF1-RELATED PROTEIN KINASE 3.... Potri.006G263500
[exp]
15.00 0.7232 CIPK25.1
AT2G13100 AtG3Pp5 glycerol-3-phosphate permease ... Potri.018G115000
[exp]
19.33 0.6364
AT4G36720 HVA22K HVA22-like protein K (.1) Potri.007G029300
[exp]
33.31 0.5715
AT3G17900 unknown protein Potri.008G194632
[exp]
53.94 0.6856
AT5G22220 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2... Potri.004G200800
[exp]
56.12 0.5567 2,Pt-E2F1.2

Potri.004G034301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.