Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61340 128 / 2e-37 F-box family protein (.1.2) AT4G21510 112 / 5e-31 F-box family protein (.1) AT4G05010 97 / 2e-25 F-box family protein (.1) AT4G35930 76 / 2e-16 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042800 [exp] 313 / 2e-110 AT4G21510 115 / 4e-32 F-box family protein (.1) Potri.005G110200 [exp] 70 / 2e-14 AT4G35930 332 / 4e-114 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018432 [exp] 134 / 1e-39 AT4G21510 102 / 3e-27 F-box family protein (.1) Lus10011255 [exp] 129 / 8e-38 AT4G21510 114 / 1e-31 F-box family protein (.1) Lus10025956 [exp] 72 / 5e-15 AT4G35930 301 / 2e-102 F-box family protein (.1) Lus10028422 [exp] 70 / 2e-14 AT4G35930 267 / 3e-89 F-box family protein (.1) Lus10041876 [exp] 65 / 1e-12 AT4G35930 265 / 3e-88 F-box family protein (.1) Lus10022370 [exp] 62 / 2e-12 AT4G21510 67 / 1e-14 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G034400.3 pacid=42794930 polypeptide=Potri.004G034400.3.p locus=Potri.004G034400 ID=Potri.004G034400.3.v4.1 annot-version=v4.1 ATGGCATTGGGGAAGAGGTGTAGTTCAATGAGGGCAAATAGGGTTTGTGGTGGTCCTATAGTGAGCGGAGAAGAAGAGGGGTTAGGGTTCAAGTTTGTTA GGTCATATTCATTTGGAAGGAAAAGGATTTTAAGTACTAAGAATAATGTTAACAGTGAAGATCTGTTGAATCTTGATTCCACTTTTAAGTCTCCATTGAA GAGGCTCTGCAGTTTAGAGCCTGAAAAGTCTAATCTTGAAAGCCTGCCTCAAGATATCTTGATCAGGGTTTTGTGTCGTGTGGATCATGATGATTTGAAG CAGCTTTTTCATGTGTCTAAAGTGATTAGAGAAGCTACTTTGATTGCAAAAGAAAGTCATTTTGCCTATAGCACCCCAAGGAAGTCTCAAGGTTTTCGAT CTCCATTCGATCTTGAGAATCCAGGTGAATTGGATGAAATTGAAGCTCCAAATGCGCCAAAGCAGCGAAGGTCTTACAAGTCACGGTTAAATCGGAAGAG CATTGCTGATGTATCAGTGGCATTGTTCGCTTCGCCAAAGAAGGGGCTATTCATGGAAACAGAAATGTGA
AA sequence Show only first row Show all	>Potri.004G034400.3 pacid=42794930 polypeptide=Potri.004G034400.3.p locus=Potri.004G034400 ID=Potri.004G034400.3.v4.1 annot-version=v4.1 MALGKRCSSMRANRVCGGPIVSGEEEGLGFKFVRSYSFGRKRILSTKNNVNSEDLLNLDSTFKSPLKRLCSLEPEKSNLESLPQDILIRVLCRVDHDDLK QLFHVSKVIREATLIAKESHFAYSTPRKSQGFRSPFDLENPGELDEIEAPNAPKQRRSYKSRLNRKSIADVSVALFASPKKGLFMETEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61340			F-box family protein (.1.2)		Potri.004G034400 [exp]	0	1
AT2G01100			unknown protein		Potri.008G126800 [exp]	2.00	0.8064
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	3.46	0.7694
AT5G03990			unknown protein		Potri.016G042400 [exp]	4.00	0.7835
AT3G16640		TCTP	translationally controlled tum...		Potri.005G024800 [exp]	8.24	0.7570	Pt-TCTP.1
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.010G191300 [exp]	11.00	0.8201
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.002G201600 [exp]	11.22	0.7994
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.001G436100 [exp]	13.26	0.7152	Pt-AERO1.1
					Potri.018G013850 [exp]	14.07	0.7704
AT5G10695			unknown protein		Potri.018G007300 [exp]	17.74	0.7420
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.001G286400 [exp]	18.13	0.7125

Compare expression of checked genes

Potri.004G034400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.