Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G61320 162 / 1e-44 FBD / Leucine Rich Repeat domains containing protein (.1) AT4G15060 66 / 4e-11 unknown protein AT1G69630 61 / 7e-10 F-box/RNI-like superfamily protein (.1) AT5G56690 61 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G42770 61 / 1e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56440 58 / 8e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G13570 57 / 1e-08 F-box/RNI-like superfamily protein (.1) AT3G03360 57 / 1e-08 F-box/RNI-like superfamily protein (.1) AT2G04230 57 / 1e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042900 [exp] 651 / 0 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.017G107600 [exp] 66 / 2e-11 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 64 / 1e-10 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.013G151700 [exp] 62 / 3e-10 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 59 / 4e-09 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.008G050800 [exp] 59 / 5e-09 AT2G39490 264 / 1e-84 F-box family protein (.1) Potri.011G136200 [exp] 58 / 6e-09 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.011G098700 [exp] 58 / 7e-09 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.001G322900 [exp] 56 / 5e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011971 [exp] 186 / 3e-52 AT1G61320 103 / 2e-23 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10034733 [exp] 185 / 4e-52 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10010664 [exp] 181 / 1e-50 AT1G61320 125 / 6e-31 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10018433 [exp] 144 / 3e-37 AT1G61330 109 / 2e-25 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10011254 [exp] 86 / 2e-17 AT1G61330 84 / 6e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10006726 [exp] 78 / 2e-16 AT1G61330 66 / 1e-12 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10034414 [exp] 56 / 3e-08 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 54 / 1e-07 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 54 / 1e-07 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10002959 [exp] 54 / 2e-07 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G034500.1 pacid=42794334 polypeptide=Potri.004G034500.1.p locus=Potri.004G034500 ID=Potri.004G034500.1.v4.1 annot-version=v4.1 ATGGCATCAGCAGAAATTGTGAGGCAAACTCTCATCATAGAGATTTCACGTAAGAGAGTAAAGAGGCTCTATCTTGGTAACACAAGTGACACTAATCATA GTGTTATTCTTCCTGATGATGTGCTTGATAAGATTCTTGCATTCTTGCCTATCAAAAAGGCTATGCAGATTGGAATCTTATCTTCAAGATTCAATCATTC TTGGATCTTCAGTCGTAGATTACACTTTGATAATGATTTTGCCAGAGGTCGCAGTCCAGAAAATTTTAAATCCATGGTTAATAAAGTCTTTGACCAGCAT GCAGGTTCAAGTATTTTAAGTTTTCGATTATCTTTTGATGCAAATGGTGAGGGGTTCTTGGTTGAAAAGTGGATAAAAAAAGCTATTGAAAAGGGTGTTG AAGAGCTCGAATTGCTTTTTTATGTAATTGGAATTAATTTTGAAGGGGGAGGGCCTGTTAAACTCATTTCTGATGTTTATGACGTTGAGTCCATCAAAAT CTTAAAGCTTAGTTTTTGTCAACTTGATCTTCCACCGAAGTTTAAAGGTCTGCATTTTTTTAGCACACTTGTTCTTAGAAAGATCATTGTAACCCCAACA TTGATAGATAATCTATTTCTCAATTGCTTGTTACTTGAGACTTTAGATATAGCACAATGTTATAGAATTTTTCATTTGAAAATATCCACCCAGAATTTAA AGAAGTTTAAGGAGTTAAAGGTTGGAGATTGCCCGGAGATTCTGATGATTGACATTGATGCACCAACTCTACATGCAATCCATTATTGTGGGCATGTTTG TTTTATCAAATTCACCAATATCCCTGAAGTGAAAGATGTGATGCTCAATTTTGGACCTTCAAAAGGCTTTACAGGGACATTTCAAGTGAGAAATCTTGTG TACGATCTCTATAATATTCGTGTTCTCACCACTACCAGTACATTTCTTGAGGGTTTAACTCCAAAGTTTATGGGTGGAACATTGACAGAAATGCAATTCT CTTTTTGGAATTTGATAGAATTTCATTTGATCATGGAAGGTGCAATGTATTGCAATCCTTATGATATTGTTTCTTTCCTCAAGAATTGCCAGTATGTAGA GAAGATTTTCATTGATCTCAAAGATTTTAACTTCGTATGTGGACCGTACTGGGAATTGCGTAATCGACAAGCTTTTGAGCAATCCCATGTATCTTTTCAC AACCTTAAGTTCATTAAACTCTATGGATTTAAGTTTCAGAAAGACGAACTTCTGTTGGTGAAGTTTCTCCTGGGGAGCGCACCTGGCCTGGAGAAACTAG TGCTTATCACTCCCAATAAGTCGAGACGTGTCAAAGTTGTTACCCTAAATTTACAAGGCTTCTATCAAGATATCCAATCTTGGAAGGCATCTTCAAGAGC CGAGATAGCTGTGTTTGAGCATTCGAATGACAGGAGTTCTGTTTCTCCTATGCATTCAAAGACATGGTACTAG
AA sequence Show only first row Show all	>Potri.004G034500.1 pacid=42794334 polypeptide=Potri.004G034500.1.p locus=Potri.004G034500 ID=Potri.004G034500.1.v4.1 annot-version=v4.1 MASAEIVRQTLIIEISRKRVKRLYLGNTSDTNHSVILPDDVLDKILAFLPIKKAMQIGILSSRFNHSWIFSRRLHFDNDFARGRSPENFKSMVNKVFDQH AGSSILSFRLSFDANGEGFLVEKWIKKAIEKGVEELELLFYVIGINFEGGGPVKLISDVYDVESIKILKLSFCQLDLPPKFKGLHFFSTLVLRKIIVTPT LIDNLFLNCLLLETLDIAQCYRIFHLKISTQNLKKFKELKVGDCPEILMIDIDAPTLHAIHYCGHVCFIKFTNIPEVKDVMLNFGPSKGFTGTFQVRNLV YDLYNIRVLTTTSTFLEGLTPKFMGGTLTEMQFSFWNLIEFHLIMEGAMYCNPYDIVSFLKNCQYVEKIFIDLKDFNFVCGPYWELRNRQAFEQSHVSFH NLKFIKLYGFKFQKDELLLVKFLLGSAPGLEKLVLITPNKSRRVKVVTLNLQGFYQDIQSWKASSRAEIAVFEHSNDRSSVSPMHSKTWY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61330			FBD, F-box and Leucine Rich Re...		Potri.004G034500 [exp]	0	1
					Potri.014G065100 [exp]	7.34	0.8518
					Potri.005G037850 [exp]	10.24	0.8154
					Potri.006G228650 [exp]	11.22	0.9825
					Potri.012G134051 [exp]	13.41	0.9825
AT5G12460			Protein of unknown function (D...		Potri.001G256200 [exp]	14.69	0.9825
					Potri.003G054301 [exp]	15.29	0.9825
AT1G78720			SecY protein transport family ...		Potri.011G114900 [exp]	16.97	0.9825
AT5G15948		CPuORF10	conserved peptide upstream ope...		Potri.017G108901 [exp]	17.49	0.9825
					Potri.011G074033 [exp]	18.00	0.9825
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.004G179457 [exp]	20.90	0.9137

Compare expression of checked genes

Potri.004G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.