Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21520 333 / 6e-114 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 42 / 0.0002 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 40 / 0.0007 RACK1C_AT receptor for activated C kinase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G043000 [exp] 394 / 8e-138 AT4G21520 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011253 [exp] 342 / 4e-117 AT4G21520 596 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018434 [exp] 254 / 9e-84 AT4G21520 357 / 2e-121 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002600 [exp] 47 / 7e-06 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1) Lus10002602 [exp] 0 / 1 AT4G21520 59 / 8e-28 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.004G034600.4 pacid=42795013 polypeptide=Potri.004G034600.4.p locus=Potri.004G034600 ID=Potri.004G034600.4.v4.1 annot-version=v4.1 ATGATTTGTCTCCACAAGGAACCCACCATTTCTTTAAACAATTCCGGACCACTTCTTCAAACTCTTAACAATTTCCTTAAAGGCATTAAATGGTCTCTAG ACGGGTCCTGTTTTTTAACAAGTTCTGAGGATAATACCCTGTGTTTGTTCTCAATACGAGATAATGGTAGTGGCTGTGATGCTGATGGGTGTTGTTTACC TACTGATGAAGATTCATATGATGCAAATCTTGTTGTGAAGGAAGGGGAATCCGTGTATGACTTCTGTTGGTATCCATATACGACTGCTTCAGCTGCGTTG ACATATCGTGCTTATGATGCTGTGGATGAAATTACTGCTGCCATTTCTCTTGCATTTAACCCAGCTGGGACTAAGATATTTGCTGGATACAATAAATCTA TCAGAATCTTTGATATACATCGCCCTGGTAGAGATTTTGCACAGTATTCAACTACTCAAGGAAATAAAGAAGGGCAACCAGGTATAATATCTGCAGTTGC CTTTTCTTCAACTCACACCGGAATGCTAGCTACTGGTTCTTACAACCAAACAAATGCAATCTATAGGGAAGACAGTATGGAACTCTTGTACATTTTATAT GGCCAAGAAGGTGGGATTACACATGTTCAATTCTCAAAGGATGGAAACTATCTTTATACTGGAGGCAGGAAGGACCCCTATATCTTGTGCTGGGATGTAC GGAAAGCTGTTGAAGTTGTGTACAAAAAAGTGTTTATCTTATGA
AA sequence Show only first row Show all	>Potri.004G034600.4 pacid=42795013 polypeptide=Potri.004G034600.4.p locus=Potri.004G034600 ID=Potri.004G034600.4.v4.1 annot-version=v4.1 MICLHKEPTISLNNSGPLLQTLNNFLKGIKWSLDGSCFLTSSEDNTLCLFSIRDNGSGCDADGCCLPTDEDSYDANLVVKEGESVYDFCWYPYTTASAAL TYRAYDAVDEITAAISLAFNPAGTKIFAGYNKSIRIFDIHRPGRDFAQYSTTQGNKEGQPGIISAVAFSSTHTGMLATGSYNQTNAIYREDSMELLYILY GQEGGITHVQFSKDGNYLYTGGRKDPYILCWDVRKAVEVVYKKVFIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21520			Transducin/WD40 repeat-like su...		Potri.004G034600 [exp]	0	1
AT2G33240		ATXID, XID	myosin XI D (.1)		Potri.010G062480 [exp]	2.82	0.8476
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.008G092400 [exp]	4.89	0.8292
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.013G008400 [exp]	5.00	0.8314
AT3G62190			Chaperone DnaJ-domain superfam...		Potri.002G188300 [exp]	11.66	0.7934
AT5G37550			unknown protein		Potri.017G131300 [exp]	11.74	0.7362
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.009G018500 [exp]	12.24	0.7772
AT4G22120			ERD (early-responsive to dehyd...		Potri.011G009801 [exp]	14.00	0.7791
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.002G148200 [exp]	14.42	0.7949
AT5G48970			Mitochondrial substrate carrie...		Potri.010G024100 [exp]	14.96	0.8053
AT1G64320			myosin heavy chain-related (.1...		Potri.001G094266 [exp]	16.43	0.7792

Compare expression of checked genes

Potri.004G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.