ATMRP12.4 (Potri.004G034700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ATMRP12.4
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30410 2216 / 0 ATMRP13, ABCC12 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1)
AT1G30420 2205 / 0 ATMRP12, ABCC11 ATP-binding cassette C11, multidrug resistance-associated protein 12 (.1)
AT2G34660 2200 / 0 EST4, ATMRP2, ABCC2, AtABCC2 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
AT1G30400 2188 / 0 ATABCC1, EST1, ATMRP1 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, Arabidopsis thaliana ATP-binding cassette C1, ATP-binding cassette C1, multidrug resistance-associated protein 1 (.1.2)
AT1G04120 743 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
AT2G47800 722 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
AT3G62700 719 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
AT3G60160 708 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
AT3G59140 689 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
AT3G13080 667 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G034800 3162 / 0 AT1G30410 2242 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1)
Potri.011G043100 2601 / 0 AT1G30410 2090 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1)
Potri.011G091200 2309 / 0 AT2G34660 2491 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
Potri.014G180100 741 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Potri.014G130500 726 / 0 AT3G62700 2059 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Potri.012G033600 722 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.002G255800 713 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Potri.015G023800 709 / 0 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.014G193400 707 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038530 2320 / 0 AT2G34660 2543 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
Lus10023275 2316 / 0 AT2G34660 2553 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
Lus10036153 1711 / 0 AT2G34660 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
Lus10039320 735 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10027567 735 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10022858 731 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Lus10011498 728 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Lus10023139 699 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Lus10018027 698 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10042023 690 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00005 ABC_tran ABC transporter
CL0241 ABC_membrane PF00664 ABC_membrane ABC transporter transmembrane region
Representative CDS sequence
>Potri.004G034700.4 pacid=42794713 polypeptide=Potri.004G034700.4.p locus=Potri.004G034700 ID=Potri.004G034700.4.v4.1 annot-version=v4.1
ATGGGTTTGGAGGCATTGGTTTGGTATTGTCGACCTATGGCAAATGGGGTTTGGGCAAAAGAAGTGGATAATGCATTTGGTGCTTACACTCCCTGTGCCA
TTGACTCCCTAGTCATTTGCATTTCTCATCTGGTTCTTCTTGGTCTGTGCTTGTATCGAATATGGTTGATTATTGACAACAATACCAAAGTTCAAAAATA
CTGTCTCAGGACAAATTACTATAATTACATGCTGGGTTTTTTGGCTGCTTACTGCACAGTTCAGCCTTTATTAAGGTTGTTTATGGATGTCTCAATCTTC
AACCTGGATGGCCAGACTTCCCTTTCTCCCTTCGAGCTGGTCTCCTTGATTGTTGAGGCCCTTGCCTGGTGTTCCACTCTTATCATGATTGGTTTGGAAA
CAAAAATATACATTCGACAGTTTCGATGGTATGTGCGGTTTGGAGTCATTTATGTGTTGGTAGGGGAAGCGGCAATGCTCAATCTCATACTGTCAGTGAG
TGATTACTACAGTAGATTTACATTGTATATGTATATCAGCACGGTTTTCTGCCAGGTTTTGCTTGGCATTCTTCTACTTGTTTATATTCCCAATTTGGAT
CCTTATCCAGATTATGTTATGATGGAATCTGAGTCTCTTGATAATTGTGAATATGAAGCACTTCCTGGAAGAGAGCAAATATGTCCTGAGAGGCACGCCA
ACTTATTTTCTAGAATATTTTTTGGATGGTTGACTCCACTCATGAAGCAAGGCCATAAAAGACCTATTACTGAAAAGGATGTTTGGAAGTTAGACACATG
GGACCAGACTGAGACATTGATAAAAAAGTTCCAGACTTGTTGGGTTGAAGAATCTAAAAGGCCACAGCCACGTCTCTTAAGAGCACTAAACAATAGTCTT
GGGGGAAGGTTTTGGTTGGGAGGATTTTTTAAGATTGGCAATGATCTTTCTCAATTTGTGGGACCTATTGTATTGAGCCACCTCTTGCAGTCAATGCAAC
GAGGTGATCCAGCTTGGATTGGTTATATCTATGCCTTCATAATTTTCCTTGGGGTGTTGTTCGGTGCGCTTTGTGAATCTCAGTTTTTCCAGAATGTTAT
GCGTGTTGGTTTTCAGCTGAGGTCAACTCTGGTGGCTGCTATATTTCGTAAATCCTTGAAATTAACTCATGAGGGTCGAAAGAACTTTCCATCAGGTAAG
ATAACAAATATGATCACAACAGATGCCAATGCACTTCAGCAAATATGCCAACAACTTCATGGATTATGGTCTGCTCCATTTCGTATCACCATCTCCATGG
TTCTTCTTTACCAACAATTAGGTGTTGCTTCACTTTTTGGCTCACTAATGCTTGTTCTCATGGTCCCCACACAAACAATTTTGATGAGCAAGATGAGAAA
GCTAACTAAGGAAGGATTGCATAGGACAGACAAAAGAGTTAGCCTCATGAATGAAATCTTAGCTGCCATGGATGTTATGAAATGTTATGCATGGGAGAAG
AGCTTTCAATCCAGAATTCAAAGTGTGCGGGATGATGAGTTGTCATGGTTTCGCGGTGCACAATTACTATCGGCTTTCAATAGTTTTATACTGAACATCA
TCCCAGTTATTGTGACACTGGTTTCATTCGGCACGTTCACCTTGCTTGGCGGAGATTTGACACCTGCAAGGGCATTTACGTCACTCTCTCTGTTTCAAGT
CTTAAGATCTCCTCTAAACATGCTTCCTAACTTACTAAGCCAGGTTGTAAATGCAAATATATCATTGCAACGCTTGGAGGAACTGTTTTTAGCTGAAGAG
AGAATTTTAGCACCAAATCTGCCTCTTAAACTTGGAATTCCAGCTATCTCAATTGAAAATGGGAACTTTTTATGGGATTCAAAGCTAGAAAAGCCAACGT
TGTCAGATATCAATTTAAAAATACAAGTTGGCAGCTTAGTTGCAATTGTTGGCGGGACTGGAGAAGGAAAAACATCTCTTATATCAGCAATGCTTGGAGA
ACTGCCTCCTATGGAAGATGCAAGTGTAGTTATAAGAGGGACTGTTGCATATGTTCCTCAAGTTTCATGGATCTTCAATGCTACTGTGCGTGACAACATA
TTATTTAGGTCAGAATATGAACCTTCACGCTATTGGAAAGCTATTGATGTAACTGCATTACAACATGATCTCGACTTGCTTCCAGGCCATGACCTCACTG
AGATAGGTGAAAGAGGAGTCAATATTAGTGGAGGGCAGAAGCAAAGAGTTTCCATGGCTAGGGCTGTCTACTCCAATTCAGATGTATACATATTCGATGA
CCCTTTAAGCGCTTTAGATGCTCATGTTGGTCGACAGGTCTTCAACAGTTGTATTAAGGACGAGTTGCAAGGAAAAACCAGGGTTCTTGTCACCAACCAG
CTACATTTTCTTCCACAAGTGGATAAAATTATTCTTCTCAGTGAAGGTATGATTAAAGAGGAGGGAACCTTTGAGGAACTCTCTGAAAATGGCAAGCTGT
TCCAGAAGCTGATGGAAAATGCAGGGAAAATGGAAGAGCTAGTGGAAGAAAAGAACAGTGAAAATTTGGACTGCAAAAGCTTAAAACCAGCAGCTAATGG
GGGAAATGATTTGCCACAAAAAGCAGGTTACAAGATGAAAGTGAAAGGAGGGAAATCTGTACTTATCAAGCAAGAAGAACGTGAAACAGGTGTTGTCAGT
TGGAATGTTTTGATTAGGTATAACAATGCATTAGGAGGCATATTGGTGGTTTTAATAATCTTTTTGTGCTACTTATTAACTGAAGTTCTTCGAGTTTCAA
GAAGTACATGGTTGAGTGTTTGGACTAATCAAAGTACTTTGGAGAGTTATAAGCCAGGATACTACATTTTCGTGTATGCACTTCTATCATTTGGTCAGGT
GATTGTGACTCTAGTGAACTCTTATTGGTTAATCAGTTCAAGTCTTCATGCAGCCAAAAGACTTCATGATGCCATGCTAGACTCTATCCTACGAGCTCCC
ATGCTATTTTTCCACACTAACCCATCTGGGAGAATAATCAATAGGTTTGCGAAGGATCTAGGTGAAATAGATCGTAACGTGGCCAATATTGCCAACAATT
TTCTAAACCAAGCCTGGCAGCTGTTTTCAACTTTTGTGCTGATAGGCATTGTGAGCACAATATCATTGTGGGCTGTTATGCCACTTCTGATCTTGTTTTA
TTCAGCCTATCTATATTATCAGAGCACATCCCGTGAAGTGAAACGTCTGGATTCCATTACCAGGTCTCCAGTTTATGCACAATTTGGAGAAGCGTTAAAT
GGTTTGTCAAGTATTCGTGCATATAAAGCATATGATTGGATGGCAATCATCAATGGGAAGTCTATGGACAATAATATCAGGTTTACTCTGGTAAATATGA
GTTCAAATCACTGGCTCACCATAAGGTTGGTAACACTAGGAGGGATCATGATTTGGTTGATAGCAACATTTGCAGTTTTGGGGAATGGAAGAACAGAAAA
TCATGTGGAATTTGCATCTGAAATGGGTCTACTACTTAGTTATACTTTGAACATCACTGGTCTGTTGAGTAATGTTCTAAGACATGCTAGTAGAGCTGAA
AATAGCTTAAACTCTGTTGAGCGTGTTGGCACATACATGGATTTACCCTCCGAAGCTCCTGCCATTGTCGAGACCAATCGTCCTCCTCCTGCATGGCCTT
CGTCAGGATCAATTAAATTCCGAGATGTTGTTCTGCGTTACAGACCCGAGCTTCCTCCAGTCTTACATCATTTGTCCTTTGAAGTCTCTCCTAGTGAAAA
GCTAGGAATAGTTGGAAGAACAGGAGCAGGGAAATCTAGCATGCTAAATGCACTGTTCCGTATTGTAGAACTGGAAAGAGGAGAAATCACCATTGATGGT
TGTGACGTTGCTAAGTTTGGACTCACAGATTTGCGGAAAATTCTCAGTATCATACCCCAATCACCAGTTCTCTTCTCAGGAACTGTGCGATTTAATCTCG
ATCCATTTAGTGAACACAATGATGCTGACCTATGGGAGGCTTTGGAGAGGGCACATTTAAAGGATGCCATTAGAAATAATTCTTTTGGTCTGGATGCTGA
GGTTTTTGAGGGAGGGGAGAATTTTAGTGTTGGACAGAGACAACTACTAAGTCTCGCACGAGCGCTGCTGCGAAGATCTAAGATTCTTGTTCTTGATGAA
GCTACTGCTTCTGTTGATGTTAGAACCGATGCTCTTATCCAGAAAACCATTCGAGAAGAATTCAGATCGTGCACAATGCTAGTCATCGCTCACAGACTAA
ATACCATTATTGACTGCGACAGAATTCTTGTGCTTGAGGCTGGTCAGGTCTTAGAACATGGCACCCCAGAGGAACTGCTACTACCAAACGAAGGAAGCGC
ATTCTCTAGGATGGTTCAAAGTACTGGTCCAGCAAATGCTCAATACTTGTATAGCCTGGTGTTTGAAAGTAAAGAGAATAAGTTGAGTAAAAGGAAGAAT
GATCATAGATGGATAGACTCTTCAAGATGGGCTGCTGCTGCCCAACTGGCCCTGGTTGTTAGTCTCACTTCTTCGGAGAATGGTCTTCCAATGTTAGATG
TTGAAGACGAGGACAACATCCTCAGGAAAACGAAAGATGCAGTTATAAGGCTGCAGGATGTCCTGGTGGGGAAGTATGATGAAGCGATATGTGATACACA
GCAACAGAGCCAAGTTCCCCAAGATGGATGGTGGTCAGCTTTCTACAGAATGATTGAAGGTTTGGCTGTAATGGGCAGGTTGTCACGCGGTAGGCATCAA
CAATATGATTATGAAAACGAACCCCTTGATTGA
AA sequence
>Potri.004G034700.4 pacid=42794713 polypeptide=Potri.004G034700.4.p locus=Potri.004G034700 ID=Potri.004G034700.4.v4.1 annot-version=v4.1
MGLEALVWYCRPMANGVWAKEVDNAFGAYTPCAIDSLVICISHLVLLGLCLYRIWLIIDNNTKVQKYCLRTNYYNYMLGFLAAYCTVQPLLRLFMDVSIF
NLDGQTSLSPFELVSLIVEALAWCSTLIMIGLETKIYIRQFRWYVRFGVIYVLVGEAAMLNLILSVSDYYSRFTLYMYISTVFCQVLLGILLLVYIPNLD
PYPDYVMMESESLDNCEYEALPGREQICPERHANLFSRIFFGWLTPLMKQGHKRPITEKDVWKLDTWDQTETLIKKFQTCWVEESKRPQPRLLRALNNSL
GGRFWLGGFFKIGNDLSQFVGPIVLSHLLQSMQRGDPAWIGYIYAFIIFLGVLFGALCESQFFQNVMRVGFQLRSTLVAAIFRKSLKLTHEGRKNFPSGK
ITNMITTDANALQQICQQLHGLWSAPFRITISMVLLYQQLGVASLFGSLMLVLMVPTQTILMSKMRKLTKEGLHRTDKRVSLMNEILAAMDVMKCYAWEK
SFQSRIQSVRDDELSWFRGAQLLSAFNSFILNIIPVIVTLVSFGTFTLLGGDLTPARAFTSLSLFQVLRSPLNMLPNLLSQVVNANISLQRLEELFLAEE
RILAPNLPLKLGIPAISIENGNFLWDSKLEKPTLSDINLKIQVGSLVAIVGGTGEGKTSLISAMLGELPPMEDASVVIRGTVAYVPQVSWIFNATVRDNI
LFRSEYEPSRYWKAIDVTALQHDLDLLPGHDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFNSCIKDELQGKTRVLVTNQ
LHFLPQVDKIILLSEGMIKEEGTFEELSENGKLFQKLMENAGKMEELVEEKNSENLDCKSLKPAANGGNDLPQKAGYKMKVKGGKSVLIKQEERETGVVS
WNVLIRYNNALGGILVVLIIFLCYLLTEVLRVSRSTWLSVWTNQSTLESYKPGYYIFVYALLSFGQVIVTLVNSYWLISSSLHAAKRLHDAMLDSILRAP
MLFFHTNPSGRIINRFAKDLGEIDRNVANIANNFLNQAWQLFSTFVLIGIVSTISLWAVMPLLILFYSAYLYYQSTSREVKRLDSITRSPVYAQFGEALN
GLSSIRAYKAYDWMAIINGKSMDNNIRFTLVNMSSNHWLTIRLVTLGGIMIWLIATFAVLGNGRTENHVEFASEMGLLLSYTLNITGLLSNVLRHASRAE
NSLNSVERVGTYMDLPSEAPAIVETNRPPPAWPSSGSIKFRDVVLRYRPELPPVLHHLSFEVSPSEKLGIVGRTGAGKSSMLNALFRIVELERGEITIDG
CDVAKFGLTDLRKILSIIPQSPVLFSGTVRFNLDPFSEHNDADLWEALERAHLKDAIRNNSFGLDAEVFEGGENFSVGQRQLLSLARALLRRSKILVLDE
ATASVDVRTDALIQKTIREEFRSCTMLVIAHRLNTIIDCDRILVLEAGQVLEHGTPEELLLPNEGSAFSRMVQSTGPANAQYLYSLVFESKENKLSKRKN
DHRWIDSSRWAAAAQLALVVSLTSSENGLPMLDVEDEDNILRKTKDAVIRLQDVLVGKYDEAICDTQQQSQVPQDGWWSAFYRMIEGLAVMGRLSRGRHQ
QYDYENEPLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30410 ATMRP13, ABCC12 ATP-binding cassette C12, mult... Potri.004G034700 0 1 ATMRP12.4
AT2G25170 CKH2, SSL2, GYM... SUPPRESSOR OF SLR 2, GYMNOS, C... Potri.006G262200 4.47 0.8495 PKL.2
AT5G15920 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structu... Potri.001G262600 5.65 0.8684
AT4G32820 Tetratricopeptide repeat (TPR)... Potri.018G057900 8.30 0.8434
AT2G36850 CHOR, ATGSL8, A... CHORUS, glucan synthase-like 8... Potri.015G089300 10.95 0.8131 ATGSL08.2
AT5G47690 binding (.1.2.3) Potri.016G005400 11.31 0.8312
AT4G25230 RIN2 RPM1 interacting protein 2 (.1... Potri.003G109400 12.36 0.7782
AT1G73970 unknown protein Potri.008G016000 12.72 0.8254
AT1G24706 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.... Potri.013G085000 12.84 0.8411
AT5G22770 ALPHA-ADR alpha-adaptin (.1.2.3) Potri.004G189700 14.62 0.7517
AT3G17205 UPL6 ubiquitin protein ligase 6 (.1... Potri.008G101300 15.55 0.8051

Potri.004G034700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.