Potri.004G034800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30410 2241 / 0 ATMRP13, ABCC12 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1)
AT1G30420 2236 / 0 ATMRP12, ABCC11 ATP-binding cassette C11, multidrug resistance-associated protein 12 (.1)
AT2G34660 2227 / 0 EST4, ATMRP2, ABCC2, AtABCC2 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
AT1G30400 2219 / 0 ATABCC1, EST1, ATMRP1 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, Arabidopsis thaliana ATP-binding cassette C1, ATP-binding cassette C1, multidrug resistance-associated protein 1 (.1.2)
AT1G04120 743 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
AT2G47800 739 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
AT3G62700 732 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
AT3G60160 721 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
AT3G59140 693 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
AT3G13080 683 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G034700 3176 / 0 AT1G30410 2216 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1)
Potri.011G043100 2650 / 0 AT1G30410 2090 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1)
Potri.011G091200 2343 / 0 AT2G34660 2491 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
Potri.014G180100 752 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Potri.014G130500 740 / 0 AT3G62700 2059 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Potri.012G033600 728 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Potri.002G205500 718 / 0 AT3G62700 2043 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Potri.002G255800 715 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Potri.014G193400 712 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038530 2355 / 0 AT2G34660 2543 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
Lus10023275 2352 / 0 AT2G34660 2553 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
Lus10036153 1741 / 0 AT2G34660 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2)
Lus10039320 741 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10027567 739 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Lus10022858 738 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2)
Lus10011498 734 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Lus10018027 708 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Lus10023139 706 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Lus10042023 703 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00005 ABC_tran ABC transporter
CL0241 ABC_membrane PF00664 ABC_membrane ABC transporter transmembrane region
Representative CDS sequence
>Potri.004G034800.2 pacid=42795797 polypeptide=Potri.004G034800.2.p locus=Potri.004G034800 ID=Potri.004G034800.2.v4.1 annot-version=v4.1
ATGGGTTTGGAGGCATTGGTTTGGTATTGTCGACCTATGGCAAATGGGGTTTGGGCAAAAGAAGTGGATAATGCATTTGGTGCTTACACTCCCTGTGCCA
TTGACTCCATAGTCATTTGCATTTCTCATCTGGTTCTTCTTGGTCTGTGCTTGTATCGAATATGGTTGATTATTGACAACAATACCAAAGTTCAAAAATA
CTGTCTCAGGACAAATTACTATAATTACATGCTGGGTTTTTTGGCTGCTTACTGCACAGTTCAGCCTTTATTAAGGTTGTTTATGGATGTCTCAATCTTC
AACCTGGATGGCCAGACTTCCCTTGCTCCCTTCGAGCTGGTCTCCTTGATTGTTGAGGCCCTTGCCTGGTGCTCCACTCTTATCATGATTGGTTTGGAAA
CAAAAATATACATTCGACAGTTTCGATGGTATGTGCGGTTTGGAGTCATTTATGTGTTGGTAGGGGAAGCGGCAATGCTCAATCTCATACTGTCAGTGAG
TGATTACTACAGTAGATTTACATTGTATATGTATATCAGCACGGTTTTCTGCCAGGTTTTGCTTGGGATTCTTCTACTTGTTTATATCCCCAATTTGGAT
CCTTATCCAGATTATGTTATGATGGAATCTGAGTCTCTTGATAATTGTGAATATGAAGCACTTCCTGGAAGAGAGCAAATATGTCCTGAGAGGCACGCCA
ACTTATTTTCTAGAATATTTTTTGGATGGTTGACTCCACTCATGAAGCAAGGCCATAAAAGACCTATTACTGAAAAGGATGTTTGGAAGTTAGACACATG
GGACCAGACTGAGACATTGATAAAAAAGTTCCAGACTTGTTGGGTTGAAGAATCTAAAAGGCCAAAGCCACGTCTCTTAAGAGCACTAAACAATAGTCTT
GGGGGAAGGTTTTGGTTGGGAGGATTTTTTAAGATTGGCTATGATCTTTCTCAATTTGTGGGACCTATTGTATTGAGCCACCTCTTGCAGTCAATGCAAC
GAGGTGATCCAGCTTGGATTGGTTATATCTATGCCTTCATAATTTTCCTTGGGGTGTTGTTCGGTGCGCTTTGTGAATCTCAGTTTTTCCAGAATGTTAT
GCGTGTTGGCTTTCAATTGAGGTCAACTCTGGTGGCTGCAATATTTCGTAAATCCTTGAAACTAACTCATGAGGGTCGAAAGAACTTCCCATCAGGGAAG
ATAACAAATATGATCACAACAGATGCCAATGCACTTCAGCAAATATGCCAACAACTTCATGGATTGTGGTCTGCTCCATTTCGTATCACCATCTCCATGG
TTCTTCTTTACCAACAATTAGGTGTTGCTTCACTTTTTGGCTCGCTCATGCTTGTTCTCATGGTCCCCACACAAACAATTTTGATGAGCAAGATGAGAAA
GCTAACTAAGGAAGGATTGCATAGGACAGACAAAAGAGTTAGCCTCATGAATGAAATCTTGGCTGCCATGGATGCTGTGAAATGTTATGCATGGGAGAAG
AGCTTTCAATCCAGAATTCAAAGTGTGCGGGATGATGAGTTGTCATGGTTTCGCAGTGCACAATTACTATCTGCTTTCAATAGTTTTATACTGAACAGCA
TCCCAGTTATTGTGACACTGGTTTCATTCGGCACGTTCACCTTGCTTGGCGGAGATTTGACACCTGCAAAGGCATTTACGTCACTCTCTCTGTTTCAAGT
CCTAAGATCTCCTCTAAACATGCTTCCTAACTTACTAAGCCAGGTTGTAAATGCAAATATATCATTGCAACGCTTGGAGGAACTGTTTTTAGCTGAAGAG
AGAATTTTAGCACCAAATCTGCCTCTTAAACTTGGAATTCCAGCTATCTCAATTGAAAATGGGAACTTTTTATGGGATTCAAAGCTAGAAAAGCCAACTT
TGTCAGATATCAATTTAAAAATACAAGTTGGCAGCTTAGTTGCAATTGTTGGCGGGACTGGAGAAGGAAAAACATCTCTTATATCAGCAATGCTTGGAGA
ACTGCCTCCTATGGAAGATGCAAGTGTAGTTATAAGAGGGACTGTTGCATATGTTCCTCAAGTTTCATGGATCTTCAATGCTACTGTGCGTGACAACATA
TTATTTGGGTCAGAATATGAACCTTCACGCTATTGGAAAGCTATTGATGTAACTGCATTACAACATGATCTCGACTTGCTTCCAGGCCATGACCTCACTG
AGATAGGTGAAAGAGGAGTCAATATTAGTGGAGGGCAGAAGCAAAGAGTTTCCATGGCTAGGGCTGTCTACTCCAATTCAGATGTATACATATTCGATGA
CCCTTTAAGTGCTTTAGATGCTCATGTTGGTCGACAGGTCTTCAACAGTTGTATTAAGGACGAGTTGCAAGGAAAAACCAGGGTTCTTGTCACCAACCAG
CTACATTTTCTTCCACAAGTGGATAAAATTATTCTTCTCAGTGAAGGTATGATTAAAGAGGAGGGAACCTTTGAGGAACTCTCTAAAAATGGCAAGCTGT
TCCAGAAGCTGATGGAAAATGCAGGGAAAATGGATGAGCTAGTGGAAGAAAAGAACAGTGAAAATTTGGACTCTAAAAGCTCAAAACCAGCAGCTAATAG
GGGAAATGATTTGCCACAAAAAGCAGGTTACAAGATGAAAGTGAAAGGAGGGAAATCTGTACTTATCAAGCAAGAAGAACGTGAAACAGGTGTTGTCAGT
TGGAATGTTTTGATAAGGTATAACAATGCATTAGGAGGCATATGGGTGGTTTTAATAATCTTTTTGTGCTACTTATTAACTGAAGTTCTTCGAGTTTCAA
GAAGTACATGGTTGAGTTTTTGGACCAATCAAAGCACTTTGGAGAGTTATAGGCCAGGATACTACATTTTCGTGTATGCACTTCTATCATTTGGTCAGGT
GATTGTGACTCTAGTGAACTCTTATTGGTTAATCAGTTCAAGTCTTCATGCAGCCAAAAGACTTCATGATGCCATGCTAGACTCTATCCTACGAGCTCCC
ATGCTATTTTTCCACACTAACCCATCTGGGAGAATAATCAATAGGTTTGCGAAGGATCTAGGTGAAATAGATCGTAACGTTGCCAATTTTGCCAACAATT
TTCTGAACCAAGCCTGGCAGCTGTTTTCAACTTTTGTGCTGATAGGCATTGTGAGCACAATATCATTGTGGGCCGTTATGCCACTTCTGATCTTGTTTTA
TTCAGCCTATCTATATTATCAGAGCACATCCCGTGAAGTGAAACGTCTGGATTCCATTACCAGGTCTCCAGTTTATGCACAATTTGGAGAAGCGTTAAAT
GGTTTGTCAAGTATTCGTGCATATAAAGCATATGATTGGATGGCAATCATCAATGGGAAGTCTATGGACAATAATATCAGGTTTACTCTTGTAAATATGA
GTTCAAATCGCTGGCTCACCATAAGGTTGGTAACACTAGGAGGGATCATGATTTGGTTGATAGCAACATTTGCAGTTTTGGGGAATGGACGAACAGAAAA
TCATGTGGAATTTGCATCTGTAATGGGTCTACTACTTAGTTATACTTTGAACATCACTGATTTGTTGAGTAATGTTCTAAGACAAGCTAGTAGAGCTGAA
AATAGCTTAAACTCTGTTGAGCGTGTTGGCACATACATGGATTTACCCTCCGAAGCTCCTGCCATTGTCGAGACCAATCGTCCTCCTCCTGCTTGGCCTT
CGTCAGGATCAATTAAATTCAGGGATGTTGTTCTGCGTTACAGACCCGAGCTTCCTCCAGTCTTACATCATTTGTCTTTTGAAGTCTCTCCTAGTGAAAA
GCTAGGAATAGTTGGAAGAACAGGAGCAGGGAAATCTAGCATGCTAAATGCACTGTTCCGTATTGTAGAACTGGAAAGAGGAGAAATCACCATTGATGGT
TGTGACGTTGCTAAGTTTGGACTCACAGATTTGCGGAAAATTCTCAGTATCATACCCCAATCACCAGTTCTCTTCTCAGGAACTGTGCGATTTAATCTCG
ATCCATTTAGTGAACACAATGATGCTGACCTATGGGAGGCTTTGGAGAGGGCACATTTAAAGGATGCCATTAGAAATAATTCTTTTGGTCTGGATGCTGA
GGTTTTTGAGGGAGGGGAGAATTTTAGTGTTGGACAGAGACAACTACTAAGTCTCGCACGAGCGCTGCTGCGAAGATCTAAGATTCTTGTTCTTGATGAA
GCTACTGCTTCTGTTGATGTTAGAACCGATGCTCTTATCCAGAAAACCATTCGAGAAGAATTCAGATCGTGCACAATGCTAGTCATCGCTCACAGACTAA
ATACCATTATTGACTGCGACAGAATTCTTGTGCTTGAGGCTGGTCAGGTCTTAGAACATGGCACCCCAGAGGAACTGCTACTACCAAACGAAGGAAGCGC
ATTCTCTAGGATGGTTCAAAGTACTGGTCCAGCAAATGCTCAATACTTGTATAGCCTGGTGTTTGAAAGTAAAGAGAATAAGTTGAGTAAAAGGAAGAAT
GATCATAGATGGATAGACTCTTCAAGATGGGCTGCAGCTGCCCAACTGGCCCTGGTTGTTAGTCTCACTTCTTCAGAGAATGGTCTTCCAATGTTGGATG
TTGGAGACGAGGACAACATCCTCAGGAAAACGAAAGATGCAGTTATAAGGCTGCAGGATGTCCTGGTGGGGAAGTATGATGAAGCGATATGTGATACACT
GCAACAGAGCCAAGTTCCCCAAGATGGATGGTGGTCAGCTTTCTACAGAATGATTGAAGGTTTGGCTGTAATGGGCAGGTTGTCACGCGGTAGGCATCAA
CAATATGATTATGAAAATGAACCCCTTGATTGGGATGATTTGAAAATTTAG
AA sequence
>Potri.004G034800.2 pacid=42795797 polypeptide=Potri.004G034800.2.p locus=Potri.004G034800 ID=Potri.004G034800.2.v4.1 annot-version=v4.1
MGLEALVWYCRPMANGVWAKEVDNAFGAYTPCAIDSIVICISHLVLLGLCLYRIWLIIDNNTKVQKYCLRTNYYNYMLGFLAAYCTVQPLLRLFMDVSIF
NLDGQTSLAPFELVSLIVEALAWCSTLIMIGLETKIYIRQFRWYVRFGVIYVLVGEAAMLNLILSVSDYYSRFTLYMYISTVFCQVLLGILLLVYIPNLD
PYPDYVMMESESLDNCEYEALPGREQICPERHANLFSRIFFGWLTPLMKQGHKRPITEKDVWKLDTWDQTETLIKKFQTCWVEESKRPKPRLLRALNNSL
GGRFWLGGFFKIGYDLSQFVGPIVLSHLLQSMQRGDPAWIGYIYAFIIFLGVLFGALCESQFFQNVMRVGFQLRSTLVAAIFRKSLKLTHEGRKNFPSGK
ITNMITTDANALQQICQQLHGLWSAPFRITISMVLLYQQLGVASLFGSLMLVLMVPTQTILMSKMRKLTKEGLHRTDKRVSLMNEILAAMDAVKCYAWEK
SFQSRIQSVRDDELSWFRSAQLLSAFNSFILNSIPVIVTLVSFGTFTLLGGDLTPAKAFTSLSLFQVLRSPLNMLPNLLSQVVNANISLQRLEELFLAEE
RILAPNLPLKLGIPAISIENGNFLWDSKLEKPTLSDINLKIQVGSLVAIVGGTGEGKTSLISAMLGELPPMEDASVVIRGTVAYVPQVSWIFNATVRDNI
LFGSEYEPSRYWKAIDVTALQHDLDLLPGHDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFNSCIKDELQGKTRVLVTNQ
LHFLPQVDKIILLSEGMIKEEGTFEELSKNGKLFQKLMENAGKMDELVEEKNSENLDSKSSKPAANRGNDLPQKAGYKMKVKGGKSVLIKQEERETGVVS
WNVLIRYNNALGGIWVVLIIFLCYLLTEVLRVSRSTWLSFWTNQSTLESYRPGYYIFVYALLSFGQVIVTLVNSYWLISSSLHAAKRLHDAMLDSILRAP
MLFFHTNPSGRIINRFAKDLGEIDRNVANFANNFLNQAWQLFSTFVLIGIVSTISLWAVMPLLILFYSAYLYYQSTSREVKRLDSITRSPVYAQFGEALN
GLSSIRAYKAYDWMAIINGKSMDNNIRFTLVNMSSNRWLTIRLVTLGGIMIWLIATFAVLGNGRTENHVEFASVMGLLLSYTLNITDLLSNVLRQASRAE
NSLNSVERVGTYMDLPSEAPAIVETNRPPPAWPSSGSIKFRDVVLRYRPELPPVLHHLSFEVSPSEKLGIVGRTGAGKSSMLNALFRIVELERGEITIDG
CDVAKFGLTDLRKILSIIPQSPVLFSGTVRFNLDPFSEHNDADLWEALERAHLKDAIRNNSFGLDAEVFEGGENFSVGQRQLLSLARALLRRSKILVLDE
ATASVDVRTDALIQKTIREEFRSCTMLVIAHRLNTIIDCDRILVLEAGQVLEHGTPEELLLPNEGSAFSRMVQSTGPANAQYLYSLVFESKENKLSKRKN
DHRWIDSSRWAAAAQLALVVSLTSSENGLPMLDVGDEDNILRKTKDAVIRLQDVLVGKYDEAICDTLQQSQVPQDGWWSAFYRMIEGLAVMGRLSRGRHQ
QYDYENEPLDWDDLKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30410 ATMRP13, ABCC12 ATP-binding cassette C12, mult... Potri.004G034800 0 1
AT1G33240 Trihelix AT-GTL2, AT-GTL... GT2-LIKE 1, GT-2-like 1 (.1) Potri.011G147400 5.29 0.8461
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Potri.005G192000 5.65 0.8570
AT5G38640 NagB/RpiA/CoA transferase-like... Potri.004G103700 6.70 0.8293
AT3G06880 Transducin/WD40 repeat-like su... Potri.012G118600 7.21 0.8523
AT4G38900 bZIP AtbZIP29 Basic-leucine zipper (bZIP) tr... Potri.004G163800 10.19 0.8119
AT3G03380 DEG7, DEGP7 degradation of periplasmic pro... Potri.017G128300 12.96 0.8346
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300 13.30 0.8489
AT1G21650 SECA2 Preprotein translocase SecA fa... Potri.002G078000 14.69 0.8424
AT4G27290 S-locus lectin protein kinase ... Potri.011G125301 18.97 0.8139
AT1G03670 ankyrin repeat family protein ... Potri.018G077250 20.39 0.8303

Potri.004G034800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.