Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21530 1076 / 0 APC4 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 52 / 1e-06 TAF5 TBP-associated factor 5 (.1) AT4G29830 42 / 0.0008 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020200 [exp] 46 / 9e-05 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.015G087200 [exp] 46 / 0.0001 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G048900 [exp] 45 / 0.0001 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 45 / 0.0002 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 44 / 0.0003 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.019G021800 [exp] 44 / 0.0003 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G145800 [exp] 42 / 0.0009 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018436 [exp] 1098 / 0 AT4G21530 980 / 0.0 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011250 [exp] 1085 / 0 AT4G21530 968 / 0.0 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 51 / 4e-06 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 50 / 6e-06 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10042076 [exp] 46 / 0.0001 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006851 [exp] 45 / 0.0002 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037593 [exp] 45 / 0.0002 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 45 / 0.0003 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10018081 [exp] 44 / 0.0008 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 43 / 0.001 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF12894 [poplar] [flax] ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain CL0186 [poplar] [flax] PF12896 [poplar] [flax] ANAPC4 Anaphase-promoting complex, cyclosome, subunit 4
Representative CDS sequence Show only first row Show all	>Potri.004G034900.1 pacid=42794323 polypeptide=Potri.004G034900.1.p locus=Potri.004G034900 ID=Potri.004G034900.1.v4.1 annot-version=v4.1 ATGGAAACCGACGAGACCGATCGCGTGCTTCCTTTCCAACTTCAATTCGATAAACCGGTCGCTTCTCAGGTTAAAATCGCAGAGTGGAATCCTGAAAAGG ATTTACTCGCAATGGTAACTGAAGACTCCAAGATTTTACTCCATCGATTCAATTGGCAGAGGTTATGGACTATCTCCCCTGGAAGGAACATTACATCATT GTGTTGGCGACCGGATGGTAAAGCGATTGCCGTTGGTCTTGAAGATGGAACCATTTATTTACATGATGTTGAGAATGGCAAATTGTTGAGAAGCTTGAAG TCTCATACCGTTGCAGTTGTGTGTCTTAATTGGGAGGAGGAAGGACAACTTATTAGAGATGACTCTAAAAACTCCTCATCATATGAAGACCGCACTTCCC GTTTCTTTCCTCCTGCTCCTAGGGTCCCCCGGATGCCTGGAGTAGTGTCTGGAGATACTGGCTTCATGGATGACAGTGAAGATTCATATAGAGAGCTGTC AAACTCTTCGTACCAACGCTTTAATATTCTGTGTAGCGGAGATAAAGATGGAAGTATATGCTTTAGCATATTTGGTATATTTCCAATCGGAAAAATTAAT ATACACAAGTTTTCAGTTCCAACCCCCTTTATTGATAAGCAGACCCCTCGTCAAATTTTGAATTCTTCCATTTACAAGGTTTCTCTGTCGAAAGACCTCT GTCGTTTGATTGTCATGTGCTCAGGAGAACTTAATGAAAACACAGAATCAAGAGAAAGCCAAATGGTCAAGCAGGGTATGCATAGCTTAGTGCTCGATAC TTCTATATTTTGGAAGAGGAAAAGTGAGCTCCATCAATTGGCTCAACAAGCTTCCAATATTGAGGACTTAACTGAAGTTATCAGGGCGTCTTTATCAGTT ATGTGCAAGCAGTGGTCAGATGCCATGCACACATTTCATGAGAAATTTGATTCTCTGTCTACCCTGATTATTGACCATGCACTGGACTCTACTCCACAAG AGGAATTTCTCAGCCTTTTAGGGGGTGCTCGGACCAGTTCAGCAGTACATCAATTTCTAGTTAACTCCCTTGGTGAAGTGGGTGTGAAGCGCGTGTTAAA GGTCATTTGTGGGACAGCAAAAGAACTTCAGCGCATTGTCCTTGATCATTTACAGCCTGCTGCAGAAATTATTGGATTTAGAATGGGAGAGCTAAGAGGC CTTTCCAGATGGCGTGCACGCTACCATGGTATTGGTTTGGATGAGATGCTTATTAACAATGCAACAGAAAAATCTGGTATGATACTAGTGCAGATTGAAC GGTTTATGAGGGTCCTTTCATCTGTGGAGCAGCAGTTTTCAAATTTCTTCAATTGGCTTCTTAAATGTATAAAGCTGCTTATGCAAGAACCCAGTGACCA GCTTCTTCCATACAATAGTGAACTTGTTGTCATATTCTTGAAGTTCTTATACGATCAGGATCCAGTTAAGCAGTTGCTGGAAGTTGATCATGATATTGAA GTTGACTTAGAAACAATGCAGAGAGTTAAGGAATTAGTTCAGTTTGGGGGATTTTCAGATTGTGAATATCTGCAAAGAACATTGGCTAAAGAATTCCAGC AAATGGAGGACAGCTTCAAGGAAGCTTTCCTGATGCCCTTTACTACCATATCAAGAAAGATGCTATGTGAGGATTTGCTGCCACTGTTTCCTCTTCCATC TTCATCTTCATCAGCATCTGTATCTATGGCAATTCCCATGTCAATATCATACTATGAGGATGCTTCTCAAGCTGTTTCATCTAATCAGACATGTCAACAC AGTTTTGTTGACTATGTATGCTTCCAAGTACCTGATGAGCCATTTTCAGATATTGCAAACTGTATAGGCGTAATAAGAGGATTTACGCATGACTTGAGCA GTTCAAAGAATGGTTATACTTCATTGGAAGCTGTACTGTTGTATGTTCCTGCTGGTTACGAGTGTGTGGATCTCTCATTATATAAGGATAGTCAAATTGT CTTGTTGTTAAATGGGGCATCTGCGTCATCTGAAAGTTCTGGAGATGCTTGTATGATGATTGTGCAAGCTAGCGAGCTTCCATTTATATCTATTTCAAGA TTCACCGACTTAAACTTATGGAACTTGTATCAACTGAAGGATTCTACTGTGCAACTGCAAATGGAGAACGAAAAAGTTCGCAATATTCCTCACTCTGTAA TTGCTCCCTTGGCAGTTAGTGCATCCAGAGGTGTTGCATGTGTTTTTGCTGCAAGAAAGCGTGCCTTGGTCTACATCCTAGAGGAAGATGAAGAAGAAGT TCCAGACACAGAATGA
AA sequence Show only first row Show all	>Potri.004G034900.1 pacid=42794323 polypeptide=Potri.004G034900.1.p locus=Potri.004G034900 ID=Potri.004G034900.1.v4.1 annot-version=v4.1 METDETDRVLPFQLQFDKPVASQVKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISPGRNITSLCWRPDGKAIAVGLEDGTIYLHDVENGKLLRSLK SHTVAVVCLNWEEEGQLIRDDSKNSSSYEDRTSRFFPPAPRVPRMPGVVSGDTGFMDDSEDSYRELSNSSYQRFNILCSGDKDGSICFSIFGIFPIGKIN IHKFSVPTPFIDKQTPRQILNSSIYKVSLSKDLCRLIVMCSGELNENTESRESQMVKQGMHSLVLDTSIFWKRKSELHQLAQQASNIEDLTEVIRASLSV MCKQWSDAMHTFHEKFDSLSTLIIDHALDSTPQEEFLSLLGGARTSSAVHQFLVNSLGEVGVKRVLKVICGTAKELQRIVLDHLQPAAEIIGFRMGELRG LSRWRARYHGIGLDEMLINNATEKSGMILVQIERFMRVLSSVEQQFSNFFNWLLKCIKLLMQEPSDQLLPYNSELVVIFLKFLYDQDPVKQLLEVDHDIE VDLETMQRVKELVQFGGFSDCEYLQRTLAKEFQQMEDSFKEAFLMPFTTISRKMLCEDLLPLFPLPSSSSSASVSMAIPMSISYYEDASQAVSSNQTCQH SFVDYVCFQVPDEPFSDIANCIGVIRGFTHDLSSSKNGYTSLEAVLLYVPAGYECVDLSLYKDSQIVLLLNGASASSESSGDACMMIVQASELPFISISR FTDLNLWNLYQLKDSTVQLQMENEKVRNIPHSVIAPLAVSASRGVACVFAARKRALVYILEEDEEEVPDTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	0	1
AT1G79210			N-terminal nucleophile aminohy...		Potri.012G123100 [exp]	4.00	0.8641
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Potri.001G408800 [exp]	4.47	0.8538	Pt-UBP14.2
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	8.36	0.8426	NFC903,Pt-MSI2.1
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Potri.007G001500 [exp]	10.48	0.7973
AT5G65360			Histone superfamily protein (....		Potri.003G208800 [exp]	14.35	0.8696
AT5G65360			Histone superfamily protein (....		Potri.003G207852 [exp]	15.09	0.8495
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	16.91	0.8349
AT1G22800			S-adenosyl-L-methionine-depend...		Potri.013G101900 [exp]	17.32	0.8387
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	18.13	0.8487	DMT901,Pt-MET1.2
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	18.16	0.8313	BGAL1.1

Compare expression of checked genes

Potri.004G034900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.