Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57580 793 / 0 Calmodulin-binding protein (.1) AT2G18750 759 / 0 Calmodulin-binding protein (.1.2.3) AT4G25800 748 / 0 Calmodulin-binding protein (.1.2) AT2G24300 617 / 0 Calmodulin-binding protein (.1.2) AT4G31000 582 / 0 Calmodulin-binding protein (.1.2) AT5G62570 333 / 2e-107 Calmodulin binding protein-like (.1.2) AT1G73805 299 / 1e-94 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 243 / 3e-72 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G043300 [exp] 1142 / 0 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 1033 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 856 / 0 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 665 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 646 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.015G071800 [exp] 400 / 2e-132 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 379 / 2e-124 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.012G054900 [exp] 353 / 5e-116 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 345 / 3e-112 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018437 [exp] 889 / 0 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10011248 [exp] 881 / 0 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 766 / 0 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 763 / 0 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10036301 [exp] 617 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10019056 [exp] 540 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 322 / 2e-101 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 317 / 8e-101 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10029861 [exp] 319 / 1e-100 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10043463 [exp] 258 / 1e-76 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [poplar] [flax] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Potri.004G035100.2 pacid=42796764 polypeptide=Potri.004G035100.2.p locus=Potri.004G035100 ID=Potri.004G035100.2.v4.1 annot-version=v4.1 ATGCAAACCGGGTATGTTGAGAGATCGAATAGTATGGCGGCGGCGGCGAGAGGGAAGAGAGGACTTGATTCAAGCTCTGGTGATGATGAAGGCCAGCCTG ATAGAAAAAGGCCTGCTTTAGCTAGTGTAATTGTTGAAGCTCTCAAGGTGGATAGTTTGCAGAAGCTTTGCTCATCGTTGGAGCCTATTCTTCGGCGAGT TGTTAGCGAAGAAGTAGAGCGAGCATTAGCAAAACTGGGCCCTGCCAAACTTACTGTACGGTCTTCTCCTAAACGTCTAGAAGGGCCTGATGGAAGAAAC TTGCAGTTGCACTTCAGGTCCAGGTTGTCCCTCCCTCTCTTTACTGCTGGGAAAGTGGAAGGGGAGCAGGGTGCTGCTATTCATATTGTGTTGATTGATG GAAATACGGGCCGTGTTGTCACGTCTGGTCCAGAATCTTCAGTAAAACTAGATGTTATTGTGCTTGAAGGTGATTTCAACAATGAAGATGATGATAATTG GACCCGGGAGGAATTTGAGTCTCATGTGGTTAAAGAACGTGAGGGCAAGAGACCACTTCTAACTGGGGATCTGCAAGTGACACTGAAAGAAGGTGTTGGA ACGCTAGGCGAGCTGACATTTACTGACAACTCAAGCTGGATAAGGAGCAGGAAGTTCAGGCTAGGGCTGATGGTTGCCTCAGGCTGTTGTGAAGGCATTC GCGTTCGTGAAGCAAAAACAGATGCCTTCACTGTTAAGGATCACCGTGGAGAATTATACAAGAAGCACTATCCACCTGCATTAACCGATGAGGTTTGGAG ATTGGAAAAGATTGGAAAAGATGGGTCATTTCACAAGAGGCTGAACAAAGCTGGAATATATTCAGTTGAAGACTTCCTCCGCCTAGTAGTTAGAGACTCG CAGAGGTTGCGAACTATTCTTGGAAGTGGCATGTCAAATAAAATGTGGGATGTTCTTGTTGAGCATGCAAAGACATGTGTTCTGAGTGGGAAACTTTATA TCTACTATCCTGAGGATGAGAAAAATGTTGGCGTTGTTTTCAACAATATTTATGAATTGAGTGGTTTAATTGCCAACGGACAGTACTACTCAGCTGACTC TCTTTCTGACAATCAGAAGGTCTATGTTGACAGCTTGGTGAAGAAGGCTTATGATAATTGGATGCATGCTATAGAGTATGATGGCAAATCCCTTCTAGAC TTCAAGATGAATCAGGGCATAGATGCTTTACAAAACGAGGTTCCATCTGTTCAACAAGAGTTTTTGAACTCATATGATCATCAGGTTACTTTACCGACCA TATCAGTTCCAGTCCCTTCAGAGCAGCCTGTTATGGACTCAGGTCTAACTGTTGGAGGTTATAATGATGATATGGCTACCAGATTCTCAATGCATCCACA GAATGGAAATTTCAACACCTCTTTTCAATTTGATGCCACTTCATTACCTTCACAGAATCCTCTGGTCCATACTTCACAGCAAATCCAGGTTCCGGGATCT GACAATTTACTTGCTCTTGGCCGTCCACAGACTTCTACACCAGGCTTTCAGAGTTTTGGCTCATCGAATCTTAATTCATACAAGGGAACTGAGGATTTCT TCTCAGAAGAGGAGATTCGTACGAGAAGTCATGAGATGCTTGAAAATGACGATATGCAGCATCTTCTTCGCATATTTAACATGGGAGGCCAGGGTCTCTC CTCCTTTAATGCCACCGAAGATGGGTACCCTTTCTCGTCAACAAACATGCCTACCGCACCTCCAAATTACAGCTTTGGTGATGATCCATCTCGTTCATCA GGCAAAGCTGTTGTCGGATGGCTCAAGCTCAAGGCAGCCCTGAGATGGGGCATCTTTGTCAGGAAGAAGGCTGCTGAGAGGCGAGCACAGCTCATAGAGT TAGATGATTCTTAG
AA sequence Show only first row Show all	>Potri.004G035100.2 pacid=42796764 polypeptide=Potri.004G035100.2.p locus=Potri.004G035100 ID=Potri.004G035100.2.v4.1 annot-version=v4.1 MQTGYVERSNSMAAAARGKRGLDSSSGDDEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTVRSSPKRLEGPDGRN LQLHFRSRLSLPLFTAGKVEGEQGAAIHIVLIDGNTGRVVTSGPESSVKLDVIVLEGDFNNEDDDNWTREEFESHVVKEREGKRPLLTGDLQVTLKEGVG TLGELTFTDNSSWIRSRKFRLGLMVASGCCEGIRVREAKTDAFTVKDHRGELYKKHYPPALTDEVWRLEKIGKDGSFHKRLNKAGIYSVEDFLRLVVRDS QRLRTILGSGMSNKMWDVLVEHAKTCVLSGKLYIYYPEDEKNVGVVFNNIYELSGLIANGQYYSADSLSDNQKVYVDSLVKKAYDNWMHAIEYDGKSLLD FKMNQGIDALQNEVPSVQQEFLNSYDHQVTLPTISVPVPSEQPVMDSGLTVGGYNDDMATRFSMHPQNGNFNTSFQFDATSLPSQNPLVHTSQQIQVPGS DNLLALGRPQTSTPGFQSFGSSNLNSYKGTEDFFSEEEIRTRSHEMLENDDMQHLLRIFNMGGQGLSSFNATEDGYPFSSTNMPTAPPNYSFGDDPSRSS GKAVVGWLKLKAALRWGIFVRKKAAERRAQLIELDDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57580			Calmodulin-binding protein (.1...		Potri.004G035100 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094800 [exp]	1.00	0.9147
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.004G175000 [exp]	5.74	0.8833	UBC.11
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	6.48	0.8795	ATCNGC19.5
AT1G34300			lectin protein kinase family p...		Potri.013G115700 [exp]	7.54	0.8949
AT5G39450			F-box family protein (.1)		Potri.005G067300 [exp]	8.36	0.8905
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	10.09	0.8912
AT1G06540			unknown protein		Potri.005G201300 [exp]	11.57	0.8951
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	11.87	0.8509
AT5G56960	bHLH	bHLH041	basic helix-loop-helix (bHLH) ...		Potri.006G148800 [exp]	12.72	0.8141
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	12.80	0.8933

Compare expression of checked genes

Potri.004G035100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.