Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05000 367 / 4e-131 VPS28-2, VPS28-1 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) AT4G21560 363 / 2e-129 VPS28-1 vacuolar protein sorting 28, vacuolar protein sorting-associated protein 28 homolog 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G043800 [exp] 389 / 6e-140 AT4G05000 364 / 7e-130 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018442 [exp] 379 / 7e-136 AT4G05000 384 / 1e-137 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Lus10011243 [exp] 379 / 1e-135 AT4G05000 383 / 1e-137 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Lus10027229 [exp] 52 / 2e-08 AT4G21380 54 / 7e-09 receptor kinase 3 (.1) Lus10027228 [exp] 0 / 1 AT4G05000 126 / 1e-50 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [poplar] [flax] VPS23_C PF03997 [poplar] [flax] VPS28 VPS28 protein
Representative CDS sequence Show only first row Show all	>Potri.004G035500.3 pacid=42794876 polypeptide=Potri.004G035500.3.p locus=Potri.004G035500 ID=Potri.004G035500.3.v4.1 annot-version=v4.1 ATGGAGGTCAAGCTATGGAATGACAAGCGCGAGAGAGAAATGTATGAGAATTTTGCCGAGCTATATGCAATAATAAAAGCCACGGAGAAGCTTGAAAAGG CATATGTTCGTGACATTATATCCTCATCTGAGTATGAAATGGAGTGCCAGAAACTCATTGCCCATTTCAAAACTTTGGCTTCCTCTCTGAAAGACACAGT CCCTAGCATCGAGCGCTTTGCAGATACATACAAGATGGACTGCCCAGCTGCCATCAACCGGCTTGTGACCTCCGGGGTGCCTGCCACAGTGGAACACCGT GCTGCTGCTGCTGTGTCGTCTACCACCTCAGCTTCCATTGTGGCTGAGTGTGTCCAGAACTTCATCACAGCTATGGATTCGTTGAAGTTGAATATGGTGG CTGTGGACCAGGTGCATCCTTTGCTTTCAGACCTCTCAGCCTCACTGAACAAGCTGAGTATTTTGCCACCTGACTTTGAGGGGAAGACAAAGATGAAAGA ATGGATTTTGAGGCTGTCTAAGATGGGGGCTGCAGATGAGCTGACAGAGCAGCAGGCCCGGCAACTTCATTTTGATCTGGAGTCCTCATACAATTCATTT ATGGCAGCTTTGCCTAGTGCTGGTACTTGA
AA sequence Show only first row Show all	>Potri.004G035500.3 pacid=42794876 polypeptide=Potri.004G035500.3.p locus=Potri.004G035500 ID=Potri.004G035500.3.v4.1 annot-version=v4.1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYEMECQKLIAHFKTLASSLKDTVPSIERFADTYKMDCPAAINRLVTSGVPATVEHR AAAAVSSTTSASIVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKTKMKEWILRLSKMGAADELTEQQARQLHFDLESSYNSF MAALPSAGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	0	1
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.011G043800 [exp]	1.00	0.8288
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.006G194100 [exp]	3.16	0.8015	SINAT2.2
AT1G44770			unknown protein		Potri.005G176500 [exp]	3.46	0.8232
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.002G160700 [exp]	4.47	0.8072
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	4.47	0.7638
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Potri.008G203400 [exp]	4.89	0.7859
AT1G06050			Protein of unknown function (D...		Potri.017G027700 [exp]	5.74	0.7611
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.009G012900 [exp]	6.48	0.7232
AT5G49710			unknown protein		Potri.002G104200 [exp]	6.70	0.7846
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	9.00	0.7183	Pt-ERF1.3

Compare expression of checked genes

Potri.004G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.