Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28740 1416 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41770 74 / 4e-13 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 72 / 1e-12 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 62 / 1e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13210 51 / 4e-06 crooked neck protein, putative / cell cycle protein, putative (.1) AT2G36730 48 / 4e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G03430 47 / 5e-05 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G043812 [exp] 262 / 2e-81 AT5G28740 236 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 76 / 1e-13 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 74 / 3e-13 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.013G135300 [exp] 61 / 4e-09 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.003G106200 [exp] 43 / 0.001 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041573 [exp] 1544 / 0 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022346 [exp] 1008 / 0 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022347 [exp] 329 / 2e-107 AT5G28740 301 / 3e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013624 [exp] 300 / 2e-95 AT5G28740 318 / 9e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003866 [exp] 161 / 3e-45 AT5G28740 149 / 6e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003867 [exp] 102 / 3e-26 AT5G28740 76 / 5e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034294 [exp] 79 / 1e-14 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 75 / 2e-13 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10003865 [exp] 57 / 1e-09 AT5G28740 75 / 5e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039811 [exp] 58 / 3e-08 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G035600.1 pacid=42794316 polypeptide=Potri.004G035600.1.p locus=Potri.004G035600 ID=Potri.004G035600.1.v4.1 annot-version=v4.1 ATGTCGATTTCCAAAGAGCTGTACCCTTCTCAAGATGATCTTCTCTACGAAGAAGAAATCTTGAGAAACCCTTTTTCTTTGAAGCTCTGGTGGCGTTATT TGATTGCCCGAAGAGAATCCCCGTTCAAGAAACGCTTCATAATTTATGAACGAGCTCTCAGAGCGTTGCCTGGAAGCTACAAGCTCTGGCATGCTTATTT GGTTGAGCGGCTCGATATAGTTCGGAATTTGCCCATTACTCATCCTCAGTTTGAAACTCTTAATAACACTTTTGAGAGGGCTTTGGTTACTATGCATAAG ATGCCTAGGATCTGGATTATGTATTTGCAGAGTTTGATTCGTCAGAAGTTAGTGACGAAGACGAGGAGGGCTTTTGATAGGGCTCTCTGTGCGTTGCCTG TTACACAGCACGATAGGATTTGGGAGTTGTATTTGAGTTTTGTGAGTCAAGAGGGTTTTCCTATTGAGACCTCTCTTAGGGTTTATAGGAGGTATTTGAT GTATGACCCGAGTCATATTGAAGATTTTATTGAGTTTTTGTTGAATTCTGGGCTTTGGCAAGAGGCTGCAGAGAGGTTGGCGTCGGTCTTGAATGATAAT CAGTTTTATTCAATTAAGGGGAAGACCAAGCATAGCTTGTGGCTTGAGTTGTGTGATTTGATGACTAGGCATGCGAAGGAGGTTTCAGGGTTAAACGTGG ATGCAATTATTAGGGGTGGGATTAGGAAGTTTACAGATGAGGTTGGGAGGCTGTGGACCTCGCTTGCTGATTATTATATCAGGAGGGAATTGTTTGAGAA GGCAAGGGATATTTTTGAGGAGGGGATGACTACTGTGGTTACTGTTAGGGATTTCAGTGTTATTTTCGACGCTTACTCACAATTTGAAGAGAGTATGGTT GCTATCAAGATGGAGAAAATGGATTTGAGCGACGATGAGGAAAATGAGGTTGAAGAGAATGGTATCGAGTTGGATGAGGATGTTCGGTTGGATTGGAGTT CCAAGTTTGAGAAGAAGTTACTTAATGGCTTTTGGTTAGATGATGACAATGACGTGGATTTGATGCTAGCACGTCTGGAGTATCTAATGGATAGAAGACC AGAATTAGCAAATAGTGTGCTTCTTCGACAAAATCCACATAATGTGGAGCAGTGGCATAGGAGGGTCAAGCTATTTGAGGGTAATCCAACGAAGCAAATT CTGACGTATACTGAAGCTGTGAGGACGGTGGATCCAATGAAAGCAGTGGGGAAGCCTCATACTTTGTGGGTTGCATTTGCAAAATTGTACGAGGATCACA ATGATCTTGTCAATGCAAGGGTAATTTTTGACAAGGCAGTGCAAGTGAACTACAAGACTGTCGATAATTTGGCAAGTGTATGGTGTGAGTGGGCTGAAAT GGAAATTAGACACAGGAATTTCAAAGGTGCGCTTGAGCTGTTGAGACGGGCCACCGCAGAACCATCAGTTGAGGTCAAACGGAGAGTGGCTGCTGATGGG GATGAACCAGTTCAGATAAAGGTTCATAAGTCCTTGAGACTCTGGGCTTTTTATGTTGATTTGGAGGAGGGCCTGGGTACCTTGGAGTCCACTCGAGCAG TGTATGAACGGATACTGGACCTGCGCATAGCCACCCCACAAATCATCATCAATTATGCTTGGCTTCTAGAGGAACATAAATACTTTGAAGATGCATTCAA GGTATATGAAAGGGGAGTCAAAATATTCAAGTATCCTCATGTGAAAGACATTTGGGTCACATATCTCTCAAAGTTCGTGAAGAGATATGGCAAGACAAAA CTAGAGCGGGCGAGGGAGTTGTTTGAACATGCTATTGAAATGGCTCCTGCTGACTCGGTGAAACCGTTGTATCTTCAATATGCAAAGCTAGAAGAGGACT ATGGTTTGGCAAAGCGAGCCATGAAGGTATACGATCAAGCAACCAAGGCTGTTCCGAACAATGAAAAACTGAGCATGTACGAAATTTATATTGCTCGTGC AGCTGAGATATTTGGTGTTCCAAAAACAAGGGAAATATATGAGCAAGCAATAGAGTCTGGCCTTCCAGACAAAGATGTGAAGACAATGTGCTTGAAGTAT GCTGACTTAGAGAAGAACCTTGGAGAAATTGACCGTGCACGTGGCATATATGTATTTGCATCCCAATTTGCTGATCCACGATCTGATTTGGATTTCTGGA ACCAATGGCATGAGTTTGAGGTTCAACATGGAAATGAAGATACCTTCAGAGAAATGTTGCGTATTAAACGAAGTGTGTCTGCAAGCTATAGCCAGACACA TTTTATTCTTCCTGAGTATTTGATGCAGAAGGACCAGAGACTGAACATTGATGATGCCAAAGACAAATTGAAACAGGCTGGGCTCCCTGAAGATGAAATG GCCGCTCTAGAGAGGCAATTAGCTCCTGCAATCAATAAAACCACTGCTAGAGATAGCAGCAGGACAGTGGGCTTTGTGAGTGCTGGAGTGCAATCTCAGT CGGATGGAGGGATGCAGGTTACTGCAAACCAGGAAGACATTGAGCTTCCAGAAGAGAGTGACTCTGAAGACGATGAAAAAGTTGAAATTGCACAGAAGGA TGTTCCCTCTGCTGTGTTTGGTGGACTGGCTGGGAAGAGGGAAGAGCCTGAGAAAGATGATGCAAAGGATGGTGGCAGTCGTCTTGGTGCCCTCGAGAGG ATTAAGAGACTAAAACGTGGAGGATGA
AA sequence Show only first row Show all	>Potri.004G035600.1 pacid=42794316 polypeptide=Potri.004G035600.1.p locus=Potri.004G035600 ID=Potri.004G035600.1.v4.1 annot-version=v4.1 MSISKELYPSQDDLLYEEEILRNPFSLKLWWRYLIARRESPFKKRFIIYERALRALPGSYKLWHAYLVERLDIVRNLPITHPQFETLNNTFERALVTMHK MPRIWIMYLQSLIRQKLVTKTRRAFDRALCALPVTQHDRIWELYLSFVSQEGFPIETSLRVYRRYLMYDPSHIEDFIEFLLNSGLWQEAAERLASVLNDN QFYSIKGKTKHSLWLELCDLMTRHAKEVSGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV AIKMEKMDLSDDEENEVEENGIELDEDVRLDWSSKFEKKLLNGFWLDDDNDVDLMLARLEYLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQI LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYEDHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMEIRHRNFKGALELLRRATAEPSVEVKRRVAADG DEPVQIKVHKSLRLWAFYVDLEEGLGTLESTRAVYERILDLRIATPQIIINYAWLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK LERARELFEHAIEMAPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKY ADLEKNLGEIDRARGIYVFASQFADPRSDLDFWNQWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQRLNIDDAKDKLKQAGLPEDEM AALERQLAPAINKTTARDSSRTVGFVSAGVQSQSDGGMQVTANQEDIELPEESDSEDDEKVEIAQKDVPSAVFGGLAGKREEPEKDDAKDGGSRLGALER IKRLKRGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28740			Tetratricopeptide repeat (TPR)...		Potri.004G035600 [exp]	0	1
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018400 [exp]	7.74	0.7781
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	8.71	0.8245	GTE910
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.008G170400 [exp]	10.95	0.7916
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	16.55	0.8220
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	16.97	0.7572
AT5G13520			peptidase M1 family protein (....		Potri.010G215700 [exp]	19.44	0.8216
AT5G41770			crooked neck protein, putative...		Potri.003G137200 [exp]	21.16	0.7774
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	22.51	0.7856
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.006G009100 [exp]	24.00	0.7514
AT3G22430			unknown protein		Potri.010G087400 [exp]	24.12	0.7986

Compare expression of checked genes

Potri.004G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.