Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54310 333 / 2e-109 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 202 / 5e-62 AGD15 ARF-GAP domain 15 (.1) AT4G05330 109 / 2e-26 AGD13 ARF-GAP domain 13 (.1) AT2G37550 101 / 5e-23 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT3G07940 100 / 5e-23 Calcium-dependent ARF-type GTPase activating protein family (.1) AT3G53710 101 / 8e-23 AGD6 ARF-GAP domain 6 (.1.2) AT4G21160 99 / 9e-23 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT5G13300 100 / 2e-22 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT5G61980 100 / 4e-22 AGD1 ARF-GAP domain 1 (.1) AT1G60860 100 / 5e-22 AGD2 ARF-GAP domain 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044100 [exp] 694 / 0 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 388 / 2e-130 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 341 / 1e-111 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 211 / 2e-65 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.001G026400 [exp] 104 / 5e-25 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 105 / 2e-24 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G372000 [exp] 103 / 2e-24 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.003G198301 [exp] 105 / 3e-24 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.015G105500 [exp] 103 / 3e-23 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038582 [exp] 344 / 8e-114 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 305 / 1e-98 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 303 / 3e-98 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10037882 [exp] 230 / 6e-70 AT5G54310 344 / 4e-114 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 192 / 6e-58 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10024165 [exp] 107 / 1e-24 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10016347 [exp] 107 / 2e-24 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10039538 [exp] 107 / 2e-24 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10002760 [exp] 107 / 2e-24 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10001799 [exp] 101 / 1e-22 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.004G035800.2 pacid=42794951 polypeptide=Potri.004G035800.2.p locus=Potri.004G035800 ID=Potri.004G035800.2.v4.1 annot-version=v4.1 ATGAACGAGAAGGCTAATGTTTCGAAAGAACTCAATGCAAAGCACAGAAAGATCTTGGAAAGCCTCCTTAAATTACCAGAGAATAGAGAGTGTGCTGACT GCAAAAGCAAAGGGCCTCGATGGGCTAGCGTGAATCTAGGAATCTTCATATGCATGCAGTGTTCAGGTATCCACAGGAGTCTAGGAGTACACATATCAAA GGTTAGATCTGCCACTTTAGACACATGGCTTCCAGGGCAGATTGCATTTATTCAATCTATGGGGAACGAGAGATCGAATAACTATTGGGAAGCAGAGTTG CCTCCTAAATATGACAGAGTTGTAATTGAGTATTTCATTCGGGCAAAGTATGACTTTGTAGAGTTACCAGTCTCAAAGAAGAGATGGGTTCCTAGGGATG GAAAAGCCAAATCACCTTCAAGGGTGAATGGAGAGAAGACTCCAACAAGAAGTAGTGGTCATGGCCAAATGAATGACACTAACCATGTTTTAGAGGAGAG GAAAGTTACTCGTCCACCCATTACCAATGGCAGAAGTCCTTCTTCCAAAAGTTCCACTCCAATGCCTGTTAAAGCTTCCACTCCATTGCCTGTTAAAGCA TCCAGTCCATTGGCTGTTAAAGCTTACACCCCATTGGCTGTTAAAGCATCTCAAAAGGCGGCACATGACAACAAATCACAAGAACCTGTGCAGAAGTCAG AACCAGCGGCCCCAAAAGCTGAATTGGCAAAGAAGGAAGAACGTGCAACCAAAGTTGTAACACTTCCAAAAGTTGATTATGCAACTGAACTTTTTAATTT GCTTTGCATGGATGATTCTAGGGAGAGTGATTTCACGACTCCTGCTCATGATAATGGATGGGCCAGTTTCCAAACTGCTGATGCAAAATCTACACCAGAG AGAAGTAGTTCATCAAACTTTATTGAAAGCATGACACAACCGAACTTAACTTCACCATCTTTGGAGAAACCCCTAAAGGCTGTGAATAATGATATCATGA ACCTCTTCGACAAGTCCAGTATGGTGTCTCCATTTTCTGTCCATCAACAGCAACTTGCAAAAATGTTATCCCAACAACAACAATTCATTATGGCTACTGC AGCAGGGTCTGGCAATGGATCCCACACCGTTCCTTCAAAATCACATAGACCAAGTTCCAATGGCATTCACTTACCTGCTCAGAGTTGGGGAAGCTATGGC TATCAAGTTCCTGGGATGGTGATGCCAATCACTGATTCACAAAAATATATGCAGATGGGAAGCAGCCAACAAGTGTATTCTGCAGGGAACCCAATTAATT TTCCGATATCAAGCATGTATAGGCCAGGTCCAGTAGCTCCAATCAATGGCATGACAAAAACCAAAGCAACTATGCCTACTCCAGCATTCCCAGTTACTCC AACTCAGCCTGCAGGGTATTACGATCTCTCATCATTAGCGACGTATACAAAACAGTGA
AA sequence Show only first row Show all	>Potri.004G035800.2 pacid=42794951 polypeptide=Potri.004G035800.2.p locus=Potri.004G035800 ID=Potri.004G035800.2.v4.1 annot-version=v4.1 MNEKANVSKELNAKHRKILESLLKLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPGQIAFIQSMGNERSNNYWEAEL PPKYDRVVIEYFIRAKYDFVELPVSKKRWVPRDGKAKSPSRVNGEKTPTRSSGHGQMNDTNHVLEERKVTRPPITNGRSPSSKSSTPMPVKASTPLPVKA SSPLAVKAYTPLAVKASQKAAHDNKSQEPVQKSEPAAPKAELAKKEERATKVVTLPKVDYATELFNLLCMDDSRESDFTTPAHDNGWASFQTADAKSTPE RSSSSNFIESMTQPNLTSPSLEKPLKAVNNDIMNLFDKSSMVSPFSVHQQQLAKMLSQQQQFIMATAAGSGNGSHTVPSKSHRPSSNGIHLPAQSWGSYG YQVPGMVMPITDSQKYMQMGSSQQVYSAGNPINFPISSMYRPGPVAPINGMTKTKATMPTPAFPVTPTQPAGYYDLSSLATYTKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	0	1
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.013G155100 [exp]	1.00	0.8477
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069400 [exp]	1.73	0.8038
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.002G104400 [exp]	4.89	0.8166
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.006G039500 [exp]	6.63	0.7748
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	7.48	0.7709
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Potri.012G097100 [exp]	8.36	0.7875
AT2G27480			Calcium-binding EF-hand family...		Potri.009G163600 [exp]	10.00	0.7996
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.009G012400 [exp]	10.00	0.7605	BGAL8.1
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.014G100800 [exp]	10.95	0.7954	MYB201
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	11.53	0.7617

Compare expression of checked genes

Potri.004G035800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.