Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77410 84 / 1e-20 BGAL16 beta-galactosidase 16 (.1) AT2G32810 82 / 9e-20 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT4G36360 81 / 3e-19 BGAL3 beta-galactosidase 3 (.1.2) AT2G28470 78 / 2e-18 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 76 / 1e-17 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G31740 63 / 4e-13 BGAL15 beta-galactosidase 15 (.1) AT2G16730 63 / 4e-13 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G38590 62 / 1e-12 BGAL14 beta-galactosidase 14 (.1.2) AT3G53080 59 / 4e-12 D-galactoside/L-rhamnose binding SUEL lectin protein (.1) AT4G35010 60 / 6e-12 BGAL11 beta-galactosidase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044300 [exp] 159 / 8e-47 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 90 / 2e-22 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.002G080700 [exp] 89 / 4e-22 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.005G232600 [exp] 84 / 2e-20 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 83 / 6e-20 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G018100 [exp] 81 / 3e-19 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G025800 [exp] 79 / 1e-18 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1) Potri.005G180600 [exp] 77 / 9e-18 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.001G025701 [exp] 75 / 3e-17 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006733 [exp] 126 / 4e-35 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10016655 [exp] 91 / 6e-23 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10041798 [exp] 87 / 1e-21 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 86 / 7e-21 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10014278 [exp] 83 / 8e-20 AT2G32810 597 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10000271 [exp] 79 / 2e-18 AT2G28470 1046 / 0.0 beta-galactosidase 8 (.1.2) Lus10025980 [exp] 79 / 2e-18 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10015625 [exp] 79 / 2e-18 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 78 / 3e-18 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10036108 [exp] 78 / 3e-18 AT2G28470 661 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.004G036000.1 pacid=42796122 polypeptide=Potri.004G036000.1.p locus=Potri.004G036000 ID=Potri.004G036000.1.v4.1 annot-version=v4.1 ATGTCTCAAAATCCAGAAGTTCGCCTGACCTGTGAACAGGGATGGCTCATTGCTGCTATCAACTTTGCTAGCTTTGGAACTCCTGAAGGACATTGCGGCA CATTCAGTCCAGGGAATTGTCATTCTGACATGTTAACCATCGTTCAGAAGGCTTGCTTTGGCCAAGAAGGATGTTCAATCCCCATATCAGCAGCTAAACT TGGAGACCCTTGTCCTGGAGTTGTAAAACGCTTCGCGGTTGAAGCTCTATGCAGTGAACGATTCCAGTTGCTGCTCTGA
AA sequence Show only first row Show all	>Potri.004G036000.1 pacid=42796122 polypeptide=Potri.004G036000.1.p locus=Potri.004G036000 ID=Potri.004G036000.1.v4.1 annot-version=v4.1 MSQNPEVRLTCEQGWLIAAINFASFGTPEGHCGTFSPGNCHSDMLTIVQKACFGQEGCSIPISAAKLGDPCPGVVKRFAVEALCSERFQLLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	0	1
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	6.00	0.7935
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	6.00	0.9243
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	6.70	0.9243	FUCT3.1
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	7.93	0.9243
					Potri.010G007833 [exp]	9.00	0.8816
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G055500 [exp]	12.44	0.6741
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	13.85	0.8025
AT5G36930			Disease resistance protein (TI...		Potri.019G000657 [exp]	16.12	0.7444
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.015G122000 [exp]	17.74	0.8148
AT3G22640		PAP85	cupin family protein (.1)		Potri.005G212333 [exp]	17.88	0.6732

Compare expression of checked genes

Potri.004G036000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.