Plant FIBer expression Database

Potri.004G036200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20340 597 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
AT4G28680 585 / 0 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G255600
[exp]
607 / 0 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Potri.013G052800
[exp]
602 / 0 AT2G20340 553 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Potri.013G052900
[exp]
601 / 0 AT2G20340 555 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Potri.016G114300
[exp]
600 / 0 AT2G20340 552 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022856
[exp]
591 / 0 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10018522
[exp]
590 / 0 AT2G20340 569 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10039740
[exp]
572 / 0 AT2G20340 568 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10024966
[exp]
518 / 0 AT2G20340 706 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10012601
[exp]
114 / 3e-30 AT2G20340 100 / 1e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00282 Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence
>Potri.004G036200.1 pacid=42795976 polypeptide=Potri.004G036200.1.p locus=Potri.004G036200 ID=Potri.004G036200.1.v4.1 annot-version=v4.1
ATGAATACCGCAGAGTCTGTACCTAAAAACCCTTCTTCTTGTTCTATGAGTCCTCTAAACCTTGAGGAGTTCAGGAGGCAAGGTTACATGGCCATTGATT
TTATTGCAGATTATTATCAGAACATTGAGAAACACCCAGTTTTAAGCCAAGTTGAACCAGGTTATCTCAAAAATCTCTTTCCAAAATCAGCCCCATATAG
TCCCGAGCCTATTGAAACAATCCTCCATGATGTGCAAAAACATATTGTTCCTGGCATCACACATTGGCAAAGTCCTAGTTACTTTGGATATTTCCCTTCA
AGTGCTAGCACTGCAGGGTTCCTTGGCGAGATGCTTTGTACTGGGTTTAATGTTGTAGGATTCGACTGGATGTCATCACCAGCTGCTACTGAACTGGAGA
ACATTGTAATGGAATGGCTTGGAGAAATGCTTACGCTTCCCAAATGTTTTCTCTTCGCTGGAAATGGCGGGGGGGTTATACAAGGGACTACTTGCGAAGC
CATTTTGTGCACCTTAGTGGCTGCAAGAGACCGAATGCTGAGCCAAATTGGGAAAGACAACATTGGGAAGCTAGTCGTCTATGGCTCAAATCAAACACAC
AGTGCACTCCAAAAGGCAGCACATGTTGCAGGAATCCATAAAACGAATTGTCGAGCAATAGAAACGACTAAATCAACATCATTTGCACTATCTCCAGAAT
CATTAAGATTGGCTATTTGTTTAGATATAGAATCTGGGCTAGTTCCCATGTTTCTATGTGCCACCATTGGGACAACTGCTACCACAGCAGTAGATCCACT
GAGACCATTATGCGATGTTGCTAATAGTTATGGCTTATGGGTACATGTCGATGCAGCGTACGCTGGTAATGCTTGTATATGCCCAGAATTCCAGCATTTT
CTTGATGGCGTAGAGGGGGCACACTCATTGAGTTTGAATGCACATAAATGGTTCTTTACCACTTTGGATTGCTGTTGCCTTTGGTTAAAAGATCCAAAAG
CTCTTACGAAGTCCCTCTCAACAAATCCCGAGTATCTTATGAGTAACCATGCAACTAATTCAGAACAAGTGGTGAACTACAAAGACTGGCAAATAGCCCT
TAGCCGAAGATTTCGATCCATGAAACTATGGCTTGTCTTGAGAAGCTATGGTGTTGGTAACCTTAGAAGCTTCCTAAGAAGCCATGTCAAAATGGCCCAG
CTTTTTGAGGATCTTGTCGCCAGTGACAAGAGATTTGAGGTTGTGGTTCCTAGAAACTTCGCAATGGTGTGTTTTAGAGCTTTGCCACTGGCAATAAGTA
AAGACGTGTCTGAAAATGGCATGGCTGTTAATGGTCAGAAAATCTCATATGACCAGGAATATTGCAGTAACCAGCTTAACCAGGAGCTTTTAAAGTCAAT
TAATGCTTCAGGGCATGTGTATCTGACTCACGCTGTTGTTGCTGGGCTCTACATCATACGATTTGCAGTCGGGGCAACGCTTACAGAGGATCGGCATGTT
TTCACGGCTTGGAAGGTGGTGCAAGAGCATTTAGATGCCATAACAGGCATGTAG
AA sequence
>Potri.004G036200.1 pacid=42795976 polypeptide=Potri.004G036200.1.p locus=Potri.004G036200 ID=Potri.004G036200.1.v4.1 annot-version=v4.1
MNTAESVPKNPSSCSMSPLNLEEFRRQGYMAIDFIADYYQNIEKHPVLSQVEPGYLKNLFPKSAPYSPEPIETILHDVQKHIVPGITHWQSPSYFGYFPS
SASTAGFLGEMLCTGFNVVGFDWMSSPAATELENIVMEWLGEMLTLPKCFLFAGNGGGVIQGTTCEAILCTLVAARDRMLSQIGKDNIGKLVVYGSNQTH
SALQKAAHVAGIHKTNCRAIETTKSTSFALSPESLRLAICLDIESGLVPMFLCATIGTTATTAVDPLRPLCDVANSYGLWVHVDAAYAGNACICPEFQHF
LDGVEGAHSLSLNAHKWFFTTLDCCCLWLKDPKALTKSLSTNPEYLMSNHATNSEQVVNYKDWQIALSRRFRSMKLWLVLRSYGVGNLRSFLRSHVKMAQ
LFEDLVASDKRFEVVVPRNFAMVCFRALPLAISKDVSENGMAVNGQKISYDQEYCSNQLNQELLKSINASGHVYLTHAVVAGLYIIRFAVGATLTEDRHV
FTAWKVVQEHLDAITGM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20340 Pyridoxal phosphate (PLP)-depe... Potri.004G036200
[exp]
0 1
AT4G25290 DNA photolyases;DNA photolyase... Potri.015G129500
[exp]
1.73 0.9058
AT5G51810 AT2353, GA20OX2... gibberellin 20 oxidase 2 (.1) Potri.005G065400
[exp]
7.74 0.9022 GA20ox2-2
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Potri.016G040200
[exp]
7.93 0.9332 LYC.2
AT2G25080 ATGPX1 glutathione peroxidase 1 (.1) Potri.018G017500
[exp]
8.48 0.9151
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.006G208300
[exp]
14.66 0.8992
AT3G47600 MYB ATMYB94, AtMYBC... myb domain protein 94 (.1) Potri.017G082500
[exp]
19.79 0.8815 Pt-MYB94.1
AT1G14820 Sec14p-like phosphatidylinosit... Potri.008G135600
[exp]
20.24 0.8848
AT1G67090 RBCS1A ribulose bisphosphate carboxyl... Potri.004G100000
[exp]
29.66 0.8917
Potri.006G069900
[exp]
36.49 0.8949
AT4G14550 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic... Potri.010G078300
[exp]
36.52 0.8506 Pt-IAA14.2

Potri.004G036200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.