Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54390 497 / 7e-176 ATAHL, AHL HAL2-like (.1) AT5G63980 295 / 6e-96 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G09290 254 / 6e-81 Inositol monophosphatase family protein (.1) AT5G63990 238 / 2e-74 Inositol monophosphatase family protein (.1.2) AT5G64000 236 / 4e-74 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT4G05090 137 / 5e-36 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044900 [exp] 833 / 0 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.011G124700 [exp] 573 / 0 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.007G105100 [exp] 273 / 9e-88 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 273 / 9e-88 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.004G033200 [exp] 146 / 3e-39 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011231 [exp] 620 / 0 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10018453 [exp] 620 / 0 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10038597 [exp] 569 / 0 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10037888 [exp] 560 / 0 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10015663 [exp] 228 / 4e-70 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037677 [exp] 211 / 5e-65 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10007817 [exp] 138 / 3e-36 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10006739 [exp] 137 / 4e-36 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00459 [poplar] [flax] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Potri.004G036400.2 pacid=42796458 polypeptide=Potri.004G036400.2.p locus=Potri.004G036400 ID=Potri.004G036400.2.v4.1 annot-version=v4.1 ATGCCTTTAAATTGCTCAAGCTTGGCTTCCAGAGTTCCACATATCTTGGGGGGGCTAAAAACAACAGCAACAACTCGTGTAGGAGGAGGAGGAGTTTTAT TCAACTTTTTTAATAAAACCCATCAAAACAATTCTCTTTGCACTGCTTCTCTTCCTTTAAACAAAAGAAACGACAGCCAAAGATTCTGTCTTTCTTCTTC TTCTTCTTCTTCTGTAATGGAAGGTATTAAAGACTCGGGCTTTTCTACTCAAGAAATTGAAAAGTATTCGAAAGAATTGGATATTGCTGTCAGGGCTGTG CAAATGGCTTGTTCTCTTTGTCAGAAAGTGCAGGAAAGTTTGATTTCTAAAACCAATAGTCAGGTACAGGCCAAGGATGACAATTCTCCTGTTACTGTAG CAGATTGGAGCGTCCAAGCTACTGTCAGCTGGATACTGTCTGAGACGTTAGGGAGCAGGAATGTGGTGATTGTTGCTGAGGAAGATGTTCAAACTCTTTC CAAACCTGATTCAGCTGGCCTACTAGAAGCTGTAGTTCAAACTGTGAATGATTGTCTTGCTGAAGCACCTCGTTTTGGTCTTAAAGCTCCAGGAACAATC CTCGGCAGTTCAGAGGTTCTTGAAGCCATCAGTCGTTGCAACTCAGCTGGTGGGCCTAGTGGAAGATTTTGGGCACTTGACCCTGTTGATGGTACGTTGG GATTTGTTCGTGGAGATCAATATGCTGTTGCTTTAGCTTTGATAGAGGATGGCGAAGTTGTTCTTGGAGTTCTTGGTTGCCCCAACTACCCAATGAGGAA AGAATGGCTAAGTTATCACCATCGTTATCATAGAATTATTTCTAAGTTGACCCCACCTACATCAGAATCTTGGGACAAAGGCTGTGTGATTTATGCAAGA AGAGGCAGTGGTGAGGCCTGGATGCAACCTCTAATACAAGGACATAAGAAGCTAGTGTGGCCAAACTCCGCAACGCCAGTCAGAGTATCCACTATTGAAA ATCCAGCACTGGCAACCTTCTGTGAACCAGTTGAGAAGGCAAATTCAAGCCACTCCTTCACAGCAGGACTAGCACACAGCGTTGGGCTTAGGAAGCAACC ATTGCGAGTGTACAGTATGGTGAAATATGCTGCGATAGCTCGCGGAGATGCTGAGGTTTTCATGAAGTTCGCCAGGGCTGGCTACAAGGAGAAGATATGG GACCATGCTGCTGGTGTTGTTATCATTCGAGAGGCTGGTGGGGTGGTGACTGATGCTGGAGGATGTCCACTGAACTTCTCAAAAGGTATGTACTTAGAAG GTCTTGATCGGGGTATTATTGCTTGTGCTGGAATCAAATTACATGAAAAGATTATCAAGGCCGTTGATGCTAGCTGGAACTCCTCTAGTTTGTAA
AA sequence Show only first row Show all	>Potri.004G036400.2 pacid=42796458 polypeptide=Potri.004G036400.2.p locus=Potri.004G036400 ID=Potri.004G036400.2.v4.1 annot-version=v4.1 MPLNCSSLASRVPHILGGLKTTATTRVGGGGVLFNFFNKTHQNNSLCTASLPLNKRNDSQRFCLSSSSSSSVMEGIKDSGFSTQEIEKYSKELDIAVRAV QMACSLCQKVQESLISKTNSQVQAKDDNSPVTVADWSVQATVSWILSETLGSRNVVIVAEEDVQTLSKPDSAGLLEAVVQTVNDCLAEAPRFGLKAPGTI LGSSEVLEAISRCNSAGGPSGRFWALDPVDGTLGFVRGDQYAVALALIEDGEVVLGVLGCPNYPMRKEWLSYHHRYHRIISKLTPPTSESWDKGCVIYAR RGSGEAWMQPLIQGHKKLVWPNSATPVRVSTIENPALATFCEPVEKANSSHSFTAGLAHSVGLRKQPLRVYSMVKYAAIARGDAEVFMKFARAGYKEKIW DHAAGVVIIREAGGVVTDAGGCPLNFSKGMYLEGLDRGIIACAGIKLHEKIIKAVDASWNSSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.004G036400 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.010G230200 [exp]	3.46	0.8496
AT1G80450			VQ motif-containing protein (....		Potri.018G016500 [exp]	7.14	0.7867
					Potri.018G077100 [exp]	13.30	0.8298
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Potri.010G119500 [exp]	18.43	0.8232
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.001G235500 [exp]	26.26	0.8205	Pt-MYB111.2,MYB206
AT2G17030			F-box family protein with a do...		Potri.002G014500 [exp]	34.40	0.7700
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	36.49	0.8095
					Potri.010G228883 [exp]	36.87	0.8056
					Potri.015G111101 [exp]	36.94	0.7689
AT2G26100			Galactosyltransferase family p...		Potri.018G053150 [exp]	37.46	0.7996

Compare expression of checked genes

Potri.004G036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.