Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21620 65 / 7e-14 glycine-rich protein (.1.2) AT1G61255 61 / 6e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G045000 [exp] 85 / 3e-21 AT4G21620 69 / 1e-15 glycine-rich protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018454 [exp] 69 / 4e-15 AT4G21620 80 / 3e-20 glycine-rich protein (.1.2) Lus10011230 [exp] 69 / 4e-15 AT4G21620 81 / 2e-20 glycine-rich protein (.1.2) Lus10006730 [exp] 57 / 2e-10 AT4G21620 70 / 3e-16 glycine-rich protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G036500.1 pacid=42795933 polypeptide=Potri.004G036500.1.p locus=Potri.004G036500 ID=Potri.004G036500.1.v4.1 annot-version=v4.1 ATGCTTCTTTTTACCTTTAAATATTCCTTCCCATTTCTCTTTCTTCTCTCCTTATCACATCCTCAGAAAACAACTCATCCTTTTTGCGCGAAAATGAAAT CCTTCGCTAGCTTCTTTCTCCTAGCTCTTTTGCTTGTTGCGTGTTCACTGTCCGTTGCAACCCAGCCCGACCCCGACCCAGACCAGTCCACAAAAGGCAA ACCCACCAACCAAAACAACAGAGCTGGTGGAAATGATGGTGGGATGGGTGGGTTCTTTGGACCCGGACCCGGGTTTGGTATACCCGGATTTGATAAAGGG TGGGGAAATATTGGTGGCGGGTATGGTGCTGGGTATGGTGGTCCAAAAGGAGGGTACTCTAGAGGTGGTGTTGTGAGGCCCAGTGTGGTGTGCAAAGAGA GAGGCCCGTGTTATAAGAAGAAGCTGACTTGCCCAGCCAAGTGTTTCACCTCTCACAGCCGGTCAGGGAAGGGCTATGGAGGAGGCGGTGGTGGTGGTGG GTGCACCCTAGATTGTAAGAAGTGTGTTGCTTATTGCTAG
AA sequence Show only first row Show all	>Potri.004G036500.1 pacid=42795933 polypeptide=Potri.004G036500.1.p locus=Potri.004G036500 ID=Potri.004G036500.1.v4.1 annot-version=v4.1 MLLFTFKYSFPFLFLLSLSHPQKTTHPFCAKMKSFASFFLLALLLVACSLSVATQPDPDPDQSTKGKPTNQNNRAGGNDGGMGGFFGPGPGFGIPGFDKG WGNIGGGYGAGYGGPKGGYSRGGVVRPSVVCKERGPCYKKKLTCPAKCFTSHSRSGKGYGGGGGGGGCTLDCKKCVAYC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	0	1
AT4G31330			Protein of unknown function, D...		Potri.006G278000 [exp]	1.73	0.8917
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	2.00	0.8895
AT1G13600	bZIP	ATBZIP58	basic leucine-zipper 58 (.1)		Potri.008G113400 [exp]	2.64	0.8617
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	3.16	0.8651	ATHK1.3
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	3.46	0.8761	MYB111.1,MYB023
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Potri.001G150700 [exp]	4.00	0.8378	PtrCAT7
					Potri.006G250550 [exp]	4.47	0.8347
AT4G33420			Peroxidase superfamily protein...		Potri.004G134800 [exp]	4.58	0.8765
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	6.63	0.8343	Pt-SWP.2
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	7.34	0.8643

Compare expression of checked genes

Potri.004G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.