Plant FIBer expression Database

Potri.004G036700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61250 159 / 2e-48 SC3 secretory carrier 3 (.1.2)
AT1G11180 152 / 1e-45 Secretory carrier membrane protein (SCAMP) family protein (.1), Secretory carrier membrane protein (SCAMP) family protein (.2)
AT1G32050 144 / 9e-43 SCAMP family protein (.1)
AT2G20840 143 / 2e-42 Secretory carrier membrane protein (SCAMP) family protein (.1)
AT1G03550 142 / 7e-42 Secretory carrier membrane protein (SCAMP) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G045100
[exp]
174 / 4e-54 AT1G61250 397 / 4e-140 secretory carrier 3 (.1.2)
Potri.004G036600
[exp]
166 / 3e-51 AT1G61250 357 / 3e-124 secretory carrier 3 (.1.2)
Potri.001G134100
[exp]
156 / 1e-47 AT1G32050 399 / 8e-142 SCAMP family protein (.1)
Potri.003G099300
[exp]
154 / 6e-47 AT1G32050 393 / 2e-139 SCAMP family protein (.1)
Potri.013G144700
[exp]
143 / 4e-42 AT2G20840 438 / 1e-156 Secretory carrier membrane protein (SCAMP) family protein (.1)
Potri.019G104000
[exp]
142 / 6e-42 AT2G20840 426 / 2e-151 Secretory carrier membrane protein (SCAMP) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031627
[exp]
167 / 4e-51 AT2G20840 406 / 2e-143 Secretory carrier membrane protein (SCAMP) family protein (.1)
Lus10038302
[exp]
164 / 2e-50 AT1G61250 442 / 3e-158 secretory carrier 3 (.1.2)
Lus10011229
[exp]
162 / 2e-49 AT1G61250 436 / 1e-155 secretory carrier 3 (.1.2)
Lus10018455
[exp]
161 / 2e-49 AT1G61250 440 / 2e-157 secretory carrier 3 (.1.2)
Lus10033712
[exp]
161 / 3e-49 AT2G20840 416 / 1e-147 Secretory carrier membrane protein (SCAMP) family protein (.1)
Lus10039794
[exp]
157 / 3e-47 AT2G20840 427 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1)
Lus10018562
[exp]
146 / 4e-43 AT2G20840 429 / 1e-152 Secretory carrier membrane protein (SCAMP) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04144 SCAMP SCAMP family
Representative CDS sequence
>Potri.004G036700.1 pacid=42794397 polypeptide=Potri.004G036700.1.p locus=Potri.004G036700 ID=Potri.004G036700.1.v4.1 annot-version=v4.1
ATGGCAGCGGGTCCTTACTATAGTAGTCTACTCTTCAATAAAGTAAACCCCTTTGCAGATGAAATGGATGGCCATTTGCAAAAGTTGCAGAATGTTGCAT
TCCTAACATGTCTAGGATTGACACAGTGTCTTGTGTGGAATTGCGCATCTGTTGCATTTGTGTGGATGGTAGGTGGGGTAGAAACAAAAATCTTGTTCCT
TGCATTGGCCTACCTAGTCTGTGGACTTCCAGCTGCAAACTGGTTATGGTTTCGTCCACTTTGTCAAGCTTTGAGGACAGAAAATACTTCCATGTTTCGT
TATTTTTTCCTGTTCTACCAGCTCCACATTGCCTTCTGCATGTTCGCTGCAGTTTCTCCTCCAATAATAGCCAAGGGAAGATCCCTCACAGGTATCATGA
GCGCATCAGACATTTCTGGTGATTATGGAGAAATTGGATACTTGTACTTCATTGGTTTCGGTTCGTTCAGCCTTGAATCAATGCTCAGCATCTGGGTTTT
GCACAAAGTTTACAAGTTTTACCGTCACGGTGGTTTAGCTCTGGAGATGGTTTAA
AA sequence
>Potri.004G036700.1 pacid=42794397 polypeptide=Potri.004G036700.1.p locus=Potri.004G036700 ID=Potri.004G036700.1.v4.1 annot-version=v4.1
MAAGPYYSSLLFNKVNPFADEMDGHLQKLQNVAFLTCLGLTQCLVWNCASVAFVWMVGGVETKILFLALAYLVCGLPAANWLWFRPLCQALRTENTSMFR
YFFLFYQLHIAFCMFAAVSPPIIAKGRSLTGIMSASDISGDYGEIGYLYFIGFGSFSLESMLSIWVLHKVYKFYRHGGLALEMV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61250 SC3 secretory carrier 3 (.1.2) Potri.004G036700
[exp]
0 1
AT3G05030 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.... Potri.005G045100
[exp]
1.73 0.8004 NHX2.1
AT5G64460 Phosphoglycerate mutase family... Potri.002G108600
[exp]
6.92 0.7888 PGM.1
Potri.017G022262
[exp]
9.16 0.7985
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.018G138802
[exp]
17.20 0.7521
AT4G39660 AGT2 alanine:glyoxylate aminotransf... Potri.005G082100
[exp]
25.78 0.7218
AT1G30760 FAD-binding Berberine family p... Potri.011G160700
[exp]
27.11 0.7891
AT3G53810 Concanavalin A-like lectin pro... Potri.009G035500
[exp]
33.98 0.7600
AT3G62260 Protein phosphatase 2C family ... Potri.002G190400
[exp]
41.47 0.7798
AT4G16760 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) Potri.003G079200
[exp]
93.46 0.6756 ACX1.1
AT5G01650 Tautomerase/MIF superfamily pr... Potri.016G126700
[exp]
140.52 0.6966

Potri.004G036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.