Plant FIBer expression Database

Potri.004G037200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11120 147 / 5e-46 unknown protein
AT1G58007 81 / 2e-20 unknown protein
AT1G09812 74 / 1e-17 unknown protein
AT4G28170 72 / 1e-16 unknown protein
AT5G65660 44 / 7e-06 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G045900
[exp]
264 / 3e-92 AT1G11120 133 / 2e-40 unknown protein
Potri.019G103800
[exp]
157 / 1e-49 AT1G11120 119 / 5e-35 unknown protein
Potri.004G224200
[exp]
101 / 6e-28 AT1G09812 118 / 4e-35 unknown protein
Potri.003G006900
[exp]
96 / 8e-26 AT1G09812 105 / 6e-30 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039796
[exp]
148 / 2e-46 AT1G11120 122 / 3e-36 unknown protein
Lus10018462
[exp]
135 / 2e-41 AT1G11120 122 / 3e-36 unknown protein
Lus10011221
[exp]
132 / 4e-40 AT1G11120 121 / 8e-36 unknown protein
Lus10018564
[exp]
99 / 2e-27 AT1G11120 74 / 1e-17 unknown protein
Lus10037361
[exp]
70 / 2e-15 AT1G09812 97 / 2e-26 unknown protein
Lus10035787
[exp]
67 / 2e-14 AT1G09812 96 / 8e-26 unknown protein
Lus10039633
[exp]
44 / 4e-06 AT5G65660 147 / 1e-46 hydroxyproline-rich glycoprotein family protein (.1)
Lus10002158
[exp]
43 / 2e-05 AT5G65660 146 / 3e-46 hydroxyproline-rich glycoprotein family protein (.1)
Lus10020107
[exp]
39 / 0.0006 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1)
PFAM info
Representative CDS sequence
>Potri.004G037200.1 pacid=42793843 polypeptide=Potri.004G037200.1.p locus=Potri.004G037200 ID=Potri.004G037200.1.v4.1 annot-version=v4.1
ATGGTTGCACATGATGGTGGCTATAATGTTTGGCCACCAGCAGAAGCTCCATTGTTGAATGTGCAAAGAGAGGATCAACACTGGAGACATTTTGACAATT
CAGTTAACGCTGTGTCTTTTGGGTTTGTAGCTACTGCCATTCTCATTTCAATGTTCTTGGTTATGGCCATCTTTGAAAGGTTTCTTAGACCCACTTCAGG
TACAGGTGGCCAAGGTGATCTCGAGTCTCAAATGGGGTTCAATTCCAAGCTTGGACACCCTTCACCGAAAATGACTGTATATACAAATGGAGTTTCTGTG
TTGATGCCTGGAGACAATATTCCTACCTTCATAGCACATCCAGCACCCGTGCCCTGTCCTCCCGAACGAATTTCCTACCTTCATGATCAACAACATATCG
ATTCATTTCCGAATCCCACTGTGAACCCTGACACAAACTCAAGCTCAAGTTCGATATTATCTCAACAAAACTAG
AA sequence
>Potri.004G037200.1 pacid=42793843 polypeptide=Potri.004G037200.1.p locus=Potri.004G037200 ID=Potri.004G037200.1.v4.1 annot-version=v4.1
MVAHDGGYNVWPPAEAPLLNVQREDQHWRHFDNSVNAVSFGFVATAILISMFLVMAIFERFLRPTSGTGGQGDLESQMGFNSKLGHPSPKMTVYTNGVSV
LMPGDNIPTFIAHPAPVPCPPERISYLHDQQHIDSFPNPTVNPDTNSSSSSILSQQN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G11120 unknown protein Potri.004G037200
[exp]
0 1
AT5G16560 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-... Potri.004G082400
[exp]
2.00 0.9079
AT5G03150 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger... Potri.006G129300
[exp]
2.44 0.8939
AT3G49810 ARM repeat superfamily protein... Potri.014G014300
[exp]
7.74 0.9029
AT5G45540 Protein of unknown function (D... Potri.007G123100
[exp]
10.58 0.8749
AT1G78580 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE... Potri.001G383600
[exp]
12.56 0.8136
AT1G76770 HSP20-like chaperones superfam... Potri.005G192700
[exp]
13.85 0.8808
AT4G25835 P-loop containing nucleoside t... Potri.001G231200
[exp]
14.83 0.8693
AT1G65910 NAC ANAC028 NAC domain containing protein ... Potri.017G139500
[exp]
16.00 0.8839
AT3G14860 NHL domain-containing protein ... Potri.001G387500
[exp]
17.74 0.8254
AT5G11620 SWIM zinc finger family protei... Potri.006G238000
[exp]
19.62 0.8754

Potri.004G037200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.