Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16250 94 / 6e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 71 / 3e-13 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G67480 67 / 5e-12 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 65 / 2e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G26960 63 / 1e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 63 / 1e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G03030 62 / 3e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 59 / 3e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 58 / 4e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 56 / 2e-08 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046100 [exp] 633 / 0 AT1G16250 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G004500 [exp] 84 / 1e-17 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G211700 [exp] 71 / 2e-13 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 70 / 5e-13 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G091900 [exp] 69 / 1e-12 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 69 / 1e-12 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 67 / 5e-12 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 67 / 6e-12 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G050600 [exp] 66 / 1e-11 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038304 [exp] 261 / 4e-86 ND 43 / 1e-04 Lus10033709 [exp] 181 / 8e-56 ND / Lus10013899 [exp] 88 / 1e-18 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 86 / 3e-18 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 70 / 7e-13 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 66 / 2e-11 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 63 / 1e-10 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 62 / 1e-10 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10036735 [exp] 62 / 3e-10 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10019425 [exp] 62 / 4e-10 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.004G037400.1 pacid=42796248 polypeptide=Potri.004G037400.1.p locus=Potri.004G037400 ID=Potri.004G037400.1.v4.1 annot-version=v4.1 ATGGGTTCACTTCCTTCTCCTCCCCAAACAACAACACCATCTTCATCGCCGGAATCTTCTCCTTCTAGCTATATGGTCTATGCCTCATTCTGCCACAAGA ATGTTTCCAATTGGATAGAATGTTACAATCCATCAAATAACACATGGAGTTATGTTAGCTCAGTTCCTAACCTGATTGAAAACCATGTCTTGAAAGGTTT TGCAATGGTTACATTAGGCGATTCAATTTACATAATTGGAGGATTATTATGTCGCAGGGTGCAAGCTCCTAACAGTATCGATGAGTCTGACGAATTTATC GACGTCGGTATTGAGGTGCTACCATCGGTTCTTCGCTACAATGTTTGTTCTAACCAATGGTCTCAAAGTGCACCCTTAGGCGAGCCACGGTACGATTTTG CTTGTGCTATATGCGAGAATAAAATTTACGTGGCAGGAGGCAAGTCCAGTTTGGCAAGTAGAAGGGGAATTTCTTGTGCCGAGGTATATGATCCAACCCT TAATGCGTGGAGCCCTCTGCCGAGTATGAGCACATTGAGGTACAAAAGTGTAGGTGTGACGTGGCGAGGTAAAATCCATGTGGTAGGGGGGTTTGCCATG AGAAGGGACTCCGATAAGACGGTGCCGTTTATAACCGAAAGGAGCTCCGCTGAAGTGTACGATCCCCGAACAGGAAAGTGGGATCTAGTGGCAGGAATGT GGCAATTAGATGTGCCTCCTAATCAAATTGTGGAAGTTGACGGGAGCCTGTTTAGCTCCGGTGATTGCTTCAAAGCATGGAAAGGTTACATTGAAGCCTA TGATGGGAAGCTCAATATATGGAATGTTGTTGATGGATCACATTTGCAAACTCTCAACTCACCAATTTCACCTTCAGATGACAACAATGAAAATTGGCCA CCAACCCAACGAATATACCTCACTATGGCACCAATTGGGACTCGATTATTTTTCCTGGCAGGCTATAGGAAGGCTGGGGAATCGTCACGTATAATGTCCA CGGCCCTTATTTTTGACACTACAGCAACTAGACGTGCATGGGCGAGCTCTGAGCCCATGGAAGAGGAGGGGGTGAAGGAACTTTGTAGCCATTGTTGCGT AGTTAGAATTTCTGAAACGACAGTAGCAAGTGAAGTGACAATCTAA
AA sequence Show only first row Show all	>Potri.004G037400.1 pacid=42796248 polypeptide=Potri.004G037400.1.p locus=Potri.004G037400 ID=Potri.004G037400.1.v4.1 annot-version=v4.1 MGSLPSPPQTTTPSSSPESSPSSYMVYASFCHKNVSNWIECYNPSNNTWSYVSSVPNLIENHVLKGFAMVTLGDSIYIIGGLLCRRVQAPNSIDESDEFI DVGIEVLPSVLRYNVCSNQWSQSAPLGEPRYDFACAICENKIYVAGGKSSLASRRGISCAEVYDPTLNAWSPLPSMSTLRYKSVGVTWRGKIHVVGGFAM RRDSDKTVPFITERSSAEVYDPRTGKWDLVAGMWQLDVPPNQIVEVDGSLFSSGDCFKAWKGYIEAYDGKLNIWNVVDGSHLQTLNSPISPSDDNNENWP PTQRIYLTMAPIGTRLFFLAGYRKAGESSRIMSTALIFDTTATRRAWASSEPMEEEGVKELCSHCCVVRISETTVASEVTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16250			Galactose oxidase/kelch repeat...		Potri.004G037400 [exp]	0	1
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	2.64	0.9969
AT3G08680			Leucine-rich repeat protein ki...		Potri.003G138900 [exp]	4.89	0.9962
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075100 [exp]	5.74	0.9962
AT5G56790			Protein kinase superfamily pro...		Potri.003G189850 [exp]	6.40	0.9792
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	8.12	0.9932
AT4G14746			unknown protein		Potri.003G057700 [exp]	8.36	0.9936
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	9.48	0.9957
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	9.48	0.9908
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	10.09	0.9955
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G143600 [exp]	10.24	0.9945

Compare expression of checked genes

Potri.004G037400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.