Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61150 384 / 2e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT4G09300 225 / 2e-74 LisH and RanBPM domains containing protein (.1) AT1G11110 222 / 2e-72 LisH and RanBPM domains containing protein (.1) AT1G06060 70 / 2e-14 LisH and RanBPM domains containing protein (.1) AT1G35470 61 / 9e-11 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 61 / 1e-10 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046200 [exp] 433 / 3e-156 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.002G029700 [exp] 82 / 4e-19 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) Potri.005G233000 [exp] 78 / 1e-17 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1) Potri.013G108400 [exp] 67 / 6e-13 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.019G080800 [exp] 67 / 1e-12 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011219 [exp] 404 / 1e-144 AT1G61150 392 / 6e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10018464 [exp] 402 / 2e-144 AT1G61150 392 / 9e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10004152 [exp] 76 / 1e-16 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10005633 [exp] 74 / 5e-16 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10001544 [exp] 65 / 7e-12 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 60 / 3e-10 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 51 / 2e-07 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10002832 [exp] 40 / 0.0008 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH CL0561 [poplar] [flax] PF10607 [poplar] [flax] CLTH CTLH/CRA C-terminal to LisH motif domain
Representative CDS sequence Show only first row Show all	>Potri.004G037600.1 pacid=42796579 polypeptide=Potri.004G037600.1.p locus=Potri.004G037600 ID=Potri.004G037600.1.v4.1 annot-version=v4.1 ATGGCTATGTCAAAAAAGGTGATTACAAGAGAAGAGTGGGAAAGAAAGCTTAATGATGTAAAAATTAGGAAAGAAGACATGAATAAATTGGTGATGAACT TTCTTGTTACGGAAGGTTACGTGGACGCTGCTGAGAAATTTCAGATGGAATCTGGAGCTGAACCAGATATAGATCTTGCAACTATTACAGATCGAATGGC TGCTAAGAAGGCTGTGCAGTGTGGAAATGTTGAGGATGCGATTGAGAAAGTGAATGATTTAAATCCTGAGATACTGGATACAAATCCGCAACTGTTTTTC CATCTCCAGCAACAGAGATTGATAGAACTGATTCGCAATGGCAAAGTAAATGAGGCTTTGCAGTTTGCTCAGGAGGAACTTGCTCCAAGGGGAGAAGAAG ATCATAGCTTTTTAGAAGAACTGGAGAGGACTGTTGCGCTGCTGGCTTTTGAAGATGTTTCTAACTGCCCTGTTGGAGATCTTTTGGATATTTCACAACG CCTTAAGACAGCAAGTGAGGTGAATGCAGCTATCCTTACAAGCCAGAGTCATGAAAAAGATCCAAAGCTTCCAAGCTTGTTAAAAATGTTGCTATGGGCT CAGAACCAACTTGATGAGAAAGCTGCATATCCTCGAATAAAGAATTTATCTACTGCCATGCTCGAAGACCCTGCAGTTTGA
AA sequence Show only first row Show all	>Potri.004G037600.1 pacid=42796579 polypeptide=Potri.004G037600.1.p locus=Potri.004G037600 ID=Potri.004G037600.1.v4.1 annot-version=v4.1 MAMSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFQMESGAEPDIDLATITDRMAAKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF HLQQQRLIELIRNGKVNEALQFAQEELAPRGEEDHSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWA QNQLDEKAAYPRIKNLSTAMLEDPAV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61150			LisH and RanBPM domains contai...		Potri.004G037600 [exp]	0	1
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Potri.008G133900 [exp]	2.00	0.8982
AT3G48480			Cysteine proteinases superfami...		Potri.015G090800 [exp]	4.00	0.9107
AT1G79200			unknown protein		Potri.005G095700 [exp]	8.71	0.8646
AT5G14710			unknown protein		Potri.001G349500 [exp]	9.48	0.8961
AT5G37055		ATSWC6, SEF	SERRATED LEAVES AND EARLY FLOW...		Potri.013G152600 [exp]	10.19	0.8386
AT5G57950			26S proteasome regulatory subu...		Potri.006G184600 [exp]	12.24	0.8554
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.010G002100 [exp]	13.96	0.8701
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	15.19	0.8638
AT2G26530		AR781	Protein of unknown function (D...		Potri.001G274000 [exp]	15.29	0.9086
AT5G21140		EMB1379	embryo defective 1379 (.1)		Potri.004G195600 [exp]	15.49	0.8108

Compare expression of checked genes

Potri.004G037600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.