Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11080 653 / 0 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT1G61130 622 / 0 SCPL32 serine carboxypeptidase-like 32 (.1) AT4G15100 610 / 0 SCPL30 serine carboxypeptidase-like 30 (.1) AT5G08260 451 / 5e-156 SCPL35 serine carboxypeptidase-like 35 (.1) AT5G23210 431 / 1e-147 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G17180 426 / 5e-146 SCPL33 serine carboxypeptidase-like 33 (.1) AT4G30610 424 / 3e-145 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 421 / 3e-144 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G35780 420 / 4e-144 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G02110 407 / 2e-138 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046600 [exp] 866 / 0 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.005G091700 [exp] 456 / 8e-158 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.007G072300 [exp] 455 / 2e-157 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G183200 [exp] 439 / 2e-151 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G091800 [exp] 435 / 1e-149 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.018G105700 [exp] 430 / 1e-147 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G094100 [exp] 415 / 9e-142 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.004G120100 [exp] 412 / 8e-141 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.010G220100 [exp] 410 / 3e-140 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018467 [exp] 768 / 0 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10011213 [exp] 762 / 0 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10010190 [exp] 435 / 2e-149 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 429 / 4e-147 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10037810 [exp] 427 / 2e-146 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10015489 [exp] 427 / 5e-146 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 422 / 2e-144 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010191 [exp] 422 / 2e-144 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017392 [exp] 418 / 8e-143 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10023505 [exp] 413 / 3e-141 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.004G037800.1 pacid=42795685 polypeptide=Potri.004G037800.1.p locus=Potri.004G037800 ID=Potri.004G037800.1.v4.1 annot-version=v4.1 ATGGATTTGGTACCCAAGGTGACAGTTTTCCTTGCTTCGGTTCATTTTGCTTTATCCTCTGTGAACCCTGTTGTGAGTATTAGACAGTACTGGCATTTTC CCGGCCAGCCTCTGGGAGGTGAGCATCTTGTAACTAATTTGCCAGGCCAGCCAGATGTGAACTTCAAGCACTATGCTGGCTATGTTACCGTCAATGAACA GAATGGACGGGCATTGTTTTACTGGTTCTATGAGGCCACAACTCATCCTGATGAAAAACCTCTAGTCCTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCT GTAGGACAAGGAGCAACACAAGAGATTGGCCCTTTCATAGTAGACACCAATGGACATGGACTTAAGTATAATCCTTACTCTTGGAATACAGAGGCCAATA TGTTATTCCTGGAATCTCCAGTTGGAGTTGGGTTTTCATATTCGAACACAACTAATGATTATCATATCATAGGGGATGAATTTACGGCAAATGATTCCTA TGCTTTCCTGCAAAAGTGGTTTCTCATGTTTCCATCATATAGAAAGCGGGCATTTTATATTGCAGGAGAGAGCTATGCAGGAAAGTATGTCCCGGAGCTT GCTGAGCTTATAATTGACAAGAATAATGATCCTTCCCTTTACATCGACCTCAAGGCTATTCTATTAGGAAATCCTGAAACAAGTGATGCTGAAGACTGGA GAGGTATGGTGGACTATGCTTGGAGTCATGCTGTCATATCAGATGAAACTCATAAGATAATTAGAGAAAGCTGCAACTTTGACAGTAATGACACATGGAG CAATGATGATTGTACCGAGTCTGTTGATGAATTAATCAAACAGTACAAGGAGATAGATATTTTCAGCCTCTACACCTCAGTTTGTATCGGTGATTCAGCA AGTTCAGATGACAGATTTACACAAATCATGTTTAGGCCCTCATCTAAGAAGATGCCAAGAATTATGGGTGGTTATGATCCATGCCGGGATGACTATGCAA AAGCTTTCTACAACAGACCAGATGTTCAAAAGGCCCTCCATGTGAGTGATGGTCACGTGCTCAAGAACTGGAGCATCTGCAACAAGAAGATATTTGAGGA ATGGCCGGACTCGAAGACATCAGTTCTTCCTATATACAAGAAGCTGATAGCAAGAGGACTTAAAATATGGGTCTACAGTGGTGATACAGATGGAGGAGTT TCTGTGCTGTCTACAAGATACAGCTTAAGCTCTCTGGGACTGCAAATCACCAAGGCATGGAGGCCCTGGTACCACCAGAAGCAGGTCAGTGGTTGGTTCC AAGAATACGAGGGTCTAACATTTGCAACATTTAGAGGAGCTGGACATGCTGTGCCAATCTTCAAACCAAGCAACTCCCTCGCATTCTTCTCAGCCTTTCT TCTAGGAGAATCTCTTCCTTGTGAACGATAA
AA sequence Show only first row Show all	>Potri.004G037800.1 pacid=42795685 polypeptide=Potri.004G037800.1.p locus=Potri.004G037800 ID=Potri.004G037800.1.v4.1 annot-version=v4.1 MDLVPKVTVFLASVHFALSSVNPVVSIRQYWHFPGQPLGGEHLVTNLPGQPDVNFKHYAGYVTVNEQNGRALFYWFYEATTHPDEKPLVLWLNGGPGCSS VGQGATQEIGPFIVDTNGHGLKYNPYSWNTEANMLFLESPVGVGFSYSNTTNDYHIIGDEFTANDSYAFLQKWFLMFPSYRKRAFYIAGESYAGKYVPEL AELIIDKNNDPSLYIDLKAILLGNPETSDAEDWRGMVDYAWSHAVISDETHKIIRESCNFDSNDTWSNDDCTESVDELIKQYKEIDIFSLYTSVCIGDSA SSDDRFTQIMFRPSSKKMPRIMGGYDPCRDDYAKAFYNRPDVQKALHVSDGHVLKNWSICNKKIFEEWPDSKTSVLPIYKKLIARGLKIWVYSGDTDGGV SVLSTRYSLSSLGLQITKAWRPWYHQKQVSGWFQEYEGLTFATFRGAGHAVPIFKPSNSLAFFSAFLLGESLPCER

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Potri.004G037800 [exp]	0	1
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Potri.002G142200 [exp]	3.16	0.6535
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Potri.008G086000 [exp]	4.79	0.7360
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	7.74	0.7025
AT4G18220			Drug/metabolite transporter su...		Potri.001G352200 [exp]	17.66	0.6026
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	18.86	0.6890
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017700 [exp]	30.96	0.6286
AT2G41850		ADPG2, PGAZAT	ARABIDOPSIS DEHISCENCE ZONE PO...		Potri.016G054800 [exp]	31.36	0.6305	PG.2
AT5G63380			AMP-dependent synthetase and l...		Potri.017G033600 [exp]	32.31	0.6035
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G175500 [exp]	37.12	0.5356	Pt-PT2.7,PtrPht1-6
AT1G54200			unknown protein		Potri.001G170500 [exp]	45.36	0.5804

Compare expression of checked genes

Potri.004G037800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.