Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08370 522 / 0 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 504 / 7e-179 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 465 / 6e-163 Melibiase family protein (.1.2) AT3G26380 96 / 5e-21 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G152200 [exp] 523 / 0 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 522 / 0 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 498 / 4e-176 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.019G056700 [exp] 462 / 6e-162 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 93 / 4e-20 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 89 / 5e-19 AT3G26380 815 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 89 / 6e-19 AT3G26380 772 / 0.0 Melibiase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036176 [exp] 655 / 0 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 597 / 0 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10024401 [exp] 522 / 0 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 488 / 6e-173 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 476 / 8e-168 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 468 / 1e-164 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10018260 [exp] 459 / 3e-161 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10029046 [exp] 458 / 2e-160 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 452 / 1e-157 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10017365 [exp] 388 / 7e-133 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF16499 [poplar] [flax] Melibiase_2 Alpha galactosidase A
Representative CDS sequence Show only first row Show all	>Potri.004G038100.1 pacid=42795173 polypeptide=Potri.004G038100.1.p locus=Potri.004G038100 ID=Potri.004G038100.1.v4.1 annot-version=v4.1 ATGAAAATGGGATCTAAATTTAGCTTTCTTTTTGTTAATGTTGTTCTTGTTGTGGCAAGCATAAACAAGGGGGTTAACTGTATGAATGTCAGCAGCAGCA ATGCCAATCTTGAAGACTACACACAGTTCCTTCTAGCCAATGGTGTGGCTCGAACACCACCAATGGGATGGAATAGTTGGAATCATTTTCAATGCAATAT AGATGAGAGGACTATTAAGACTACTGCTGATGCTCTTGTTTCAACTGGTTTGGCGGCACTTGGATACAAATATGTTAACATTGATGATTGTTGGGGAGAA GAGAAAAGAGACTGGAAGGGGAGTTTAAGGGCAAAAGCTTCTACCTTTCCTTCTGGTATCAAGGCTCTAGCAGATTATGTTCATTCAAAAGGCTTAAAAC TTGGCATATATTCTGATGCAGGTTACAGAACCTGCAGCAAGAAAATGCCAGGTTCTCTTGGACATGAAGAGCAAGATGCAAAAACCTTTGCTGAATGGGG AGTTGATTACTTGAAGTATGATAATTGCTACCATGACGGATCCAAACCTCAGGATAGGTATGCTAGGATGAGTTATGCATTGAGGAAGGTTGGGCGGCCG ATTCTTTACTCGTTATGTGAATGGGGACAAGAGTATCCGGCGAAATGGGCTGGTTTCTATGGCAATGCTTGGAGAACTACAGGGGATATTAAAGACACAT GGGAAAGTGTGATATCAATCGCAGATGAAAACAACATTTGGGGTAGATATGCCGGACCTGGCAGATGGAATGATCCTGACATGTTAGAAGTAGGCAACGG AGGGATGAGCTTAGAGGAGTACCGCTCTCATTTTAGTATTTGGGCTCTAATGAAAGCTCCTCTACTCATTGGATGTGACGTCCAATCTGCAAGCCATGAA ACTCTTAGAATCCTGGGAAACAAGGAAGTTATAGATGTTAATCAGGATCCATTGGGAGTTCAAGGCAGGAAAATACGAGCAAAAGCTGGCCTAGAGATTT GGGCAGGGTCGTTGTCGAGGAAGAGAGTTGCAGTAGTGCTATGGAATAGAAGTGGATCTCGGGCCCCTATAACCGTGGGATGGAGGGAAATTGGACTTTC TCCATATAATCCTGTCATTGTCAGAGACCTGTGGGCGCACTCATTTGTTTCAATGAGAAAACTTCATGGATTGACTGCATATGTTGCTTCCCATGCCTGC AAGATGTATATCCTGACTCCATCCTAG
AA sequence Show only first row Show all	>Potri.004G038100.1 pacid=42795173 polypeptide=Potri.004G038100.1.p locus=Potri.004G038100 ID=Potri.004G038100.1.v4.1 annot-version=v4.1 MKMGSKFSFLFVNVVLVVASINKGVNCMNVSSSNANLEDYTQFLLANGVARTPPMGWNSWNHFQCNIDERTIKTTADALVSTGLAALGYKYVNIDDCWGE EKRDWKGSLRAKASTFPSGIKALADYVHSKGLKLGIYSDAGYRTCSKKMPGSLGHEEQDAKTFAEWGVDYLKYDNCYHDGSKPQDRYARMSYALRKVGRP ILYSLCEWGQEYPAKWAGFYGNAWRTTGDIKDTWESVISIADENNIWGRYAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWALMKAPLLIGCDVQSASHE TLRILGNKEVIDVNQDPLGVQGRKIRAKAGLEIWAGSLSRKRVAVVLWNRSGSRAPITVGWREIGLSPYNPVIVRDLWAHSFVSMRKLHGLTAYVASHAC KMYILTPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.004G038100 [exp]	0	1
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	1.00	0.8337
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.009G072800 [exp]	1.41	0.7977
AT5G18850			unknown protein		Potri.010G026900 [exp]	2.82	0.7607
AT4G00770			unknown protein		Potri.002G152700 [exp]	4.00	0.7925
AT2G22900			Galactosyl transferase GMA12/M...		Potri.007G005900 [exp]	4.58	0.7927	Pt-GT6.1
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241500 [exp]	7.48	0.7127
AT1G11125			unknown protein		Potri.004G037100 [exp]	8.12	0.6993
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105100 [exp]	12.64	0.7580
AT3G54400			Eukaryotic aspartyl protease f...		Potri.001G028200 [exp]	13.41	0.7845
AT1G01300			Eukaryotic aspartyl protease f...		Potri.014G099400 [exp]	16.73	0.6980

Compare expression of checked genes

Potri.004G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.