Plant FIBer expression Database

Potri.004G038300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61100 462 / 2e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
AT4G27430 382 / 8e-117 CIP7 COP1-interacting protein 7 (.1.2)
AT5G43310 218 / 3e-58 COP1-interacting protein-related (.1.2.3.4)
AT3G14172 139 / 2e-33 unknown protein
AT1G17360 112 / 4e-25 unknown protein
AT1G72410 107 / 1e-23 COP1-interacting protein-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G046900
[exp]
1224 / 0 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
Potri.001G403700
[exp]
520 / 1e-167 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2)
Potri.011G122900
[exp]
506 / 2e-162 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2)
Potri.008G168300
[exp]
227 / 4e-61 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4)
Potri.010G070200
[exp]
225 / 2e-60 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4)
Potri.001G164900
[exp]
149 / 2e-36 AT3G14172 521 / 1e-161 unknown protein
Potri.003G070400
[exp]
143 / 2e-34 AT3G14172 544 / 3e-170 unknown protein
Potri.019G064000
[exp]
74 / 5e-13 AT3G14172 99 / 8e-21 unknown protein
Potri.013G091900
[exp]
71 / 3e-12 AT3G14172 122 / 7e-28 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011217
[exp]
523 / 4e-173 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
Lus10018471
[exp]
521 / 6e-172 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
Lus10043092
[exp]
364 / 4e-110 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2)
Lus10032660
[exp]
350 / 6e-104 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1)
Lus10021172
[exp]
216 / 1e-57 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4)
Lus10011809
[exp]
202 / 5e-53 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4)
Lus10008140
[exp]
137 / 1e-32 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2)
Lus10013178
[exp]
132 / 4e-31 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Lus10000225
[exp]
122 / 4e-30 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
Lus10025112
[exp]
76 / 1e-15 AT1G61100 50 / 8e-08 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
PFAM info
Representative CDS sequence
>Potri.004G038300.1 pacid=42795431 polypeptide=Potri.004G038300.1.p locus=Potri.004G038300 ID=Potri.004G038300.1.v4.1 annot-version=v4.1
ATGGATTCTTCAACTCTTCTTGACTATGCTCTCTTTCAACTCACCCCAACTCGAACCAGGTGTGATCTGGTTCTCTTCTGTGGAGGCAAGAATGAGAAAC
TGGCTTCTGGGTTATTTGAACCATTCATTTTACACCTTAAATTTATTAAAGATCAGATTTCCAAAGTTGGGTACTCCATCAAACTTTGCCCACCGACCAA
AAATGCTCCTTGGTTCACCAAAGGTACTTTTGAGAGATTTGTTCGTTTTGTTAGTACACCAGCTGTACTTGAGAGATTTGTCAGCCTAGAAAGAGACATC
TTGCAGATTGAGGAGAGTGCAGTTCATGCCAATGAATTATCAAACACAAATGTAGCTGGACAACTGGAGGAAGGGAGTGGACTGGCTGCCAATACTATCA
CAAGGAAGTCAAGTGATTCCTCTAAGCTAAAAGATGAGCTTGAGAAAAGTGAGCACGCTTCAATGGAAGGAAATTCCAAGATTCAGTTTCAACTGCTTCT
AGAAGCACGGAAAACATTGCTTCGCAAAGAGCAAGCTATGGCATATGCACGTGGCCTTGTTGTTGGATTTGAAGTGGACAGCATAAATGATCTCATCTCC
TTCGCAGATGCTTTTGGAGCTTCACGGTTAAGGGAAGCATGCAACAATTTCAAGGAATTATGTAAGAAAAAGCATGGGGATGGTCTCTGGATGGAGGAAT
TAGCAGCAATGGAGGCATGCCCTCCATCAGAGCTGTCATTTTTGGGAACATCAGGAATTGTACTTGCAAATGAAATTAGTTCCCTTAATCAGAATGTCAT
GCTAAATTTGACAAACAATGGGGTATCTACTGGTGATTTTATGCCCAATGGATCTACAGATGCATCAAGATCTGATTCAACTGCAGACAGCAGAAAGGAT
GGTAGCATGGGAACATCTGACCAGATAGCATCATCTAGTGCCAAAGTTCAAGTACCAATGCAGTGGCCAAACCAGATACCTCCATACATGTACAATTTCC
AAGGCCCTATTCCTCAGTTTCCTCCGTATCAAGGATATCCTTTCCCTACCATGCAGCCTATCCCTCCTAATTATCCAAGAAATATGCAGTGGCCTTCTAG
CATGAAAGAATTTAGTCAAGGAAAAAAGGATAAGTCCCTGAACAAAAAGGGATATAAATATTCAGGAGAAGACAGACAAACAAACTCCAGTGACTCTGAA
GGAAGGAGTGATTCAGATTCCCATATAGATCAGGACAAAAAGAACTCCTCCATAGATGTTCCATACAGGAAAAAACACAGGAAGAAGTCCTCTAAGACCG
TTGTCATCAGAAATATTAACTACATCACCCCCAAGAGAAGAAATGAAGGAAGTGATAGTTTTTCTGATGAAACTTCTTCAGATGAGGATGAGTACATTGA
TGAAGATACCATAAAAAAGAAGGTAGATGATGCAGTTGGATCATTGGGAAAATTGTGCAAGTCAAATTCAAGTACACAGAAAAGAAAAGGCTCAAACAAG
AGCAACCACAAGTCAAATGGATCAAGTGATGCTCCTGACCAAGATTTTGACGATGGCCCTGTTTCAAATGCATCCAGGGGAGGAAGGACTAGTGAGAACT
GGGATGCTTTCCAGAGCCTTCTGATGAAAGATGATGACACAGTTAATGGGGTAGAAAAATTGCAGCCAGTGGATGTTCAGGAAGAGCATTTCATAGTCAA
AAGCTCTGGAGATGGAACTTCATTAAGGAGCAATCGTGCTATGGACTTGGGACCAGAGAAATTACTGAACAGAAGGATGGTGACAGGTGATTCTTTTGTT
GTGACTCCGAGGGATGGGGAACACGAGGATAGAGTTAGGCTGGAAGATATAGAAAATGCAGAGAGTTTTCGACCAATCATGAAGAGAAGGGACTTGACAG
ATGAGGATTTGGTAATTTCACAAAGATTAGAAGATTCAGGAAGTGGCCTCAGGGGTATCTTATCTCGTTCCACTGAGCCATCCATAATCAAGCCTGGTAA
AGGAGATGATTGGTTTGTTATCGATCACTCAGGGAAACCAGAAAACCAGGATACAGCCAATTACATGCTATCACTAGAGGGTGATTATTCAAATGCCAAG
TCAAGTAGAAGAGACGTACTTGTTGACGATTCTTTCATGATTCATGCTCGATCTTCTGTGGATGATTTATATGGTTCTCAATGGAAAACTGACATAAGCA
TGGCTACGGATCTAACTTTATCTTCCCAGGCAGAAAATGGCATTACAGAACATAATCATGAAGTTATGGATGCCTATGAACCGAATGACCTCTGTGTGGT
CCTTGAACGAGATTCTGGATTTGAATCTACAAGGGATTCCTGGGTTACAGACCAGGGAATTGACATATCATTCATGGAAGCTCATAGGAGCTCAAATGCT
GAATCTGGTGATCAAACTGAGAAGAAGCTTCCTTCAAACAGTGACAAGACCACTGTCAAGAAAAATGGAATTAATGGGAGAAAAGTTCCAGAAGTGAGGA
CTAAAATCGTGCAAGGATCCCCCAGTAAGAACAGAACTGAGATGATGTCTAAAAGCAAGAAATCATCAGTTGTTAGTAGGCCCACAGTTCAGAAGAGCAA
GCAAGAGAAGGAAGAAGAGATTAGGAAGAAAATGGAAGAGTTAGCAATTCAACGCCTAAAAAGAATTGCTGAAAGAACTGCAGCAGCTGGTGGTGCTCCG
GCGGCAACCAAGAGGGCATCATTGGAGAGCAAATCAGTCAAAGGTTCATCCAAGTCTGACAAAAATAAAATCATTCCCAGACCTGAGAGACAAACAAGAT
AG
AA sequence
>Potri.004G038300.1 pacid=42795431 polypeptide=Potri.004G038300.1.p locus=Potri.004G038300 ID=Potri.004G038300.1.v4.1 annot-version=v4.1
MDSSTLLDYALFQLTPTRTRCDLVLFCGGKNEKLASGLFEPFILHLKFIKDQISKVGYSIKLCPPTKNAPWFTKGTFERFVRFVSTPAVLERFVSLERDI
LQIEESAVHANELSNTNVAGQLEEGSGLAANTITRKSSDSSKLKDELEKSEHASMEGNSKIQFQLLLEARKTLLRKEQAMAYARGLVVGFEVDSINDLIS
FADAFGASRLREACNNFKELCKKKHGDGLWMEELAAMEACPPSELSFLGTSGIVLANEISSLNQNVMLNLTNNGVSTGDFMPNGSTDASRSDSTADSRKD
GSMGTSDQIASSSAKVQVPMQWPNQIPPYMYNFQGPIPQFPPYQGYPFPTMQPIPPNYPRNMQWPSSMKEFSQGKKDKSLNKKGYKYSGEDRQTNSSDSE
GRSDSDSHIDQDKKNSSIDVPYRKKHRKKSSKTVVIRNINYITPKRRNEGSDSFSDETSSDEDEYIDEDTIKKKVDDAVGSLGKLCKSNSSTQKRKGSNK
SNHKSNGSSDAPDQDFDDGPVSNASRGGRTSENWDAFQSLLMKDDDTVNGVEKLQPVDVQEEHFIVKSSGDGTSLRSNRAMDLGPEKLLNRRMVTGDSFV
VTPRDGEHEDRVRLEDIENAESFRPIMKRRDLTDEDLVISQRLEDSGSGLRGILSRSTEPSIIKPGKGDDWFVIDHSGKPENQDTANYMLSLEGDYSNAK
SSRRDVLVDDSFMIHARSSVDDLYGSQWKTDISMATDLTLSSQAENGITEHNHEVMDAYEPNDLCVVLERDSGFESTRDSWVTDQGIDISFMEAHRSSNA
ESGDQTEKKLPSNSDKTTVKKNGINGRKVPEVRTKIVQGSPSKNRTEMMSKSKKSSVVSRPTVQKSKQEKEEEIRKKMEELAIQRLKRIAERTAAAGGAP
AATKRASLESKSVKGSSKSDKNKIIPRPERQTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61100 disease resistance protein (TI... Potri.004G038300
[exp]
0 1
AT4G31540 ATEXO70G1 exocyst subunit exo70 family p... Potri.006G272900
[exp]
3.46 0.8170
AT4G25810 XTH23, XTR6 xyloglucan endotransglucosylas... Potri.006G071200
[exp]
8.12 0.7975 Pt-EXT.6
AT5G67390 unknown protein Potri.005G145800
[exp]
23.66 0.8082
AT1G06840 Leucine-rich repeat protein ki... Potri.013G159200
[exp]
24.37 0.8182
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.007G002400
[exp]
34.52 0.8136
AT4G16110 GARP ARR2 response regulator 2 (.1) Potri.010G001000
[exp]
39.54 0.7878 Pt-ARR5.4
AT3G14470 NB-ARC domain-containing disea... Potri.003G015500
[exp]
40.00 0.7732
AT3G10300 Calcium-binding EF-hand family... Potri.016G043600
[exp]
45.36 0.7850
AT5G64880 unknown protein Potri.005G083900
[exp]
52.64 0.7732
AT1G55020 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, li... Potri.005G032800
[exp]
57.61 0.7516

Potri.004G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.