Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14830 176 / 1e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 118 / 5e-29 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT4G35730 118 / 4e-28 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 115 / 1e-26 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G29440 114 / 5e-26 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 112 / 1e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 108 / 2e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G51900 109 / 1e-24 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 99 / 2e-21 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 97 / 2e-21 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135700 [exp] 191 / 2e-52 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.011G122800 [exp] 130 / 1e-32 AT2G14830 137 / 5e-36 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 127 / 5e-31 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.006G149800 [exp] 124 / 2e-29 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 119 / 4e-28 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 114 / 1e-27 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.013G117100 [exp] 112 / 7e-26 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054500 [exp] 110 / 3e-25 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.001G181300 [exp] 107 / 3e-24 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033703 [exp] 173 / 6e-47 AT2G14830 210 / 8e-62 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10039808 [exp] 167 / 7e-45 AT2G14830 181 / 2e-51 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10018577 [exp] 166 / 4e-44 AT2G14830 170 / 8e-47 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028383 [exp] 124 / 2e-30 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041836 [exp] 124 / 3e-30 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028724 [exp] 123 / 1e-29 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 122 / 2e-29 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10000978 [exp] 122 / 2e-28 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10040542 [exp] 119 / 1e-27 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10033552 [exp] 105 / 3e-24 AT1G13340 208 / 6e-64 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [poplar] [flax] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Potri.004G038600.1 pacid=42793761 polypeptide=Potri.004G038600.1.p locus=Potri.004G038600 ID=Potri.004G038600.1.v4.1 annot-version=v4.1 ATGGAGAAAAGCTTCAAAGTGAGAACATGCATGTTGTCAATTTGCAGCGAGAAATCAACTAAGCTACTTCATTGCCGCCTTAATTTACTGAAGAGAAAGA GGTACTCAATTGTAAGGCAATTACGTGAGGACATTGCTCAGCTTCTCAAGATTGGTCAAAATGAGGCTGCTTTTGCCAGGGTTGAACAGCTTCTTAAGGA CCAGAGCTTATTGGATGCATATGATCTGGTGGACCACTACTGTGAATTTATCATTCTTCACTTTCCATACATTCGCAGACACAAGGACCGTCCGAAAGAT ATCAATGAAGCAGTTTCAACATTGATATTTGCTGCTGCATGGTTTGGGGATCTGCCAGAGCTCCGAGCGATCAGAAAGCTTTTTGGTAAGCGCTACGGGC AGAAATTCATTAAGGATGCACCTGCATTGCAGTCTGGAAACCTTGTCAATCATGAGATTATGGAGAAACTACGTTTAAAGTTCATCAGTGATAGTGTGAA ACTAAAATTGATCAATGAAATAGCCATGGATTATGGCCTCCAGCTGTGGTACTTGGGGTGTGATAACAGGCCCAAACAACATCTTTTGCAGATGCCTGGA AACACAGATCATCAACTGGAGAGGTTTGTTTTCGAGGAAGATGCTGGTGTCAGTTATAACAGCACCAGTGGGGCAATGGTGCTAGCTTCATATGCTAAGC ATAGCCCTGATATTCCATCTGAATTAACCATCCATCCTTCGGACAAGGCTCCTATGCACAAAAAAGCAGTCCATACAGAGAATCATTCTCAATACAAGTA TATGTATGAACTACCTGATCAAAGTGATTTCGAAAGTTCTGGCTCAAACAGCATGTCCGCAGACTCTTTCAAAGGCAATGCTGATATTGCAAGAACAGCA ACTCCAGAGATTTCATTTCAGTATCACAAGAGAACTGTCTATGCTGATGAAGTGGAGGAATTTGAGTTTAATGGTGAGGACAAAAGGTTATTTTTGTTTA ATGCATCCCCCCGTCCCTTAATTGACAACTACGCTGTTGATGGATCTACACTGTTGGCTTTATCCCACCATGGTTATAGTGAAGGCAATTGCAACAGACC TGAACCTGAGGATAAGATAGCATTGTCAAGGAAAACTCATGAAAGGATCAGGAACTCATATGGTCACAGGTTGGAAAGGAGAGTTGATACCAAGAACAAT CGTAAGTACGAATCTTTTCTGACACCAGTAAACACGAAAGGCAACGATTGCGTGGTCTTCAACGGTCAATTTTGCAACTTTTCACCATGTCAGAAACAGT TCTATCATCGAGTTTTTCATTTTCAAAATAAGCAGAGGACAATGATGCCAGCCAAAGAACGCAGGAGTGCCTCATTGGTATGCTATGATAAGGTTTTGTC CAAACCAGTGAAAGGGTATGTTAAGTCCTGTAAACGCAGCAGCAGATTAAGCCCTGAAAAGAAGTTTAGATGCTGCTTGGAGAAATCATGCTATAAATGT GATGGTCAGGTAAATGGTACTCAAACTCAAGAGAACAAGAAATTAATGGAAACTGAAGAATCATCAGATTGTCCAGCAAGATATGCCTCCTCTTATGATT CCTCTTCGCAGGAGCCTAGTCCTGGTTCAAGAAAAAAGACAATCCCACCAAAAAGGCTAAAGGGCATGACCGTCCCTGATAATGATAACCAGTCAATTTC TTCTCAGCTTGAGCTTTCAAAAGGAAGCACGGCCTCATCTTGTAGCCATGTACATCCAAAGCTCCCGGACTACGATGAAATAGCAGCTAAATTCATAGCT CTCAAGAAAGAGCATCAACTAAGAACCAATGCAGCTAGGCATGGCTTGAATATCACATGA
AA sequence Show only first row Show all	>Potri.004G038600.1 pacid=42793761 polypeptide=Potri.004G038600.1.p locus=Potri.004G038600 ID=Potri.004G038600.1.v4.1 annot-version=v4.1 MEKSFKVRTCMLSICSEKSTKLLHCRLNLLKRKRYSIVRQLREDIAQLLKIGQNEAAFARVEQLLKDQSLLDAYDLVDHYCEFIILHFPYIRRHKDRPKD INEAVSTLIFAAAWFGDLPELRAIRKLFGKRYGQKFIKDAPALQSGNLVNHEIMEKLRLKFISDSVKLKLINEIAMDYGLQLWYLGCDNRPKQHLLQMPG NTDHQLERFVFEEDAGVSYNSTSGAMVLASYAKHSPDIPSELTIHPSDKAPMHKKAVHTENHSQYKYMYELPDQSDFESSGSNSMSADSFKGNADIARTA TPEISFQYHKRTVYADEVEEFEFNGEDKRLFLFNASPRPLIDNYAVDGSTLLALSHHGYSEGNCNRPEPEDKIALSRKTHERIRNSYGHRLERRVDTKNN RKYESFLTPVNTKGNDCVVFNGQFCNFSPCQKQFYHRVFHFQNKQRTMMPAKERRSASLVCYDKVLSKPVKGYVKSCKRSSRLSPEKKFRCCLEKSCYKC DGQVNGTQTQENKKLMETEESSDCPARYASSYDSSSQEPSPGSRKKTIPPKRLKGMTVPDNDNQSISSQLELSKGSTASSCSHVHPKLPDYDEIAAKFIA LKKEHQLRTNAARHGLNIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14830			Regulator of Vps4 activity in ...		Potri.004G038600 [exp]	0	1
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G132000 [exp]	3.16	0.9250
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	8.30	0.9215
AT4G31980			unknown protein		Potri.003G209300 [exp]	8.48	0.9246
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	11.31	0.9025
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.001G252400 [exp]	12.00	0.8835
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128300 [exp]	16.43	0.8971
AT5G55530			Calcium-dependent lipid-bindin...		Potri.001G361100 [exp]	22.80	0.8823
AT3G18670			Ankyrin repeat family protein ...		Potri.002G048832 [exp]	26.07	0.8872
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.006G143200 [exp]	26.60	0.8158
AT3G16560			Protein phosphatase 2C family ...		Potri.010G024800 [exp]	27.49	0.8667

Compare expression of checked genes

Potri.004G038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.