Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51700 104 / 8e-27 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT2G37590 107 / 1e-26 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G60200 105 / 1e-26 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT5G60850 105 / 2e-26 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT1G28310 105 / 3e-26 DOF AtDof1. 4 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G55370 105 / 6e-26 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G66940 102 / 8e-26 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT3G21270 101 / 8e-26 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT3G45610 102 / 1e-25 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT1G07640 102 / 2e-25 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047500 [exp] 376 / 1e-131 AT1G07640 106 / 1e-26 Dof-type zinc finger DNA-binding family protein (.1.2.3) Potri.003G144500 [exp] 110 / 3e-28 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.004G046600 [exp] 110 / 7e-28 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.011G055600 [exp] 110 / 1e-27 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.012G081300 [exp] 109 / 1e-27 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 108 / 2e-27 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.015G048300 [exp] 108 / 2e-27 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.001G238400 [exp] 108 / 3e-27 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.007G038100 [exp] 108 / 4e-27 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036172 [exp] 132 / 6e-37 AT3G55370 109 / 3e-28 OBF-binding protein 3 (.1.2.3) Lus10038310 [exp] 131 / 3e-36 AT3G55370 108 / 9e-28 OBF-binding protein 3 (.1.2.3) Lus10016566 [exp] 108 / 3e-27 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10042114 [exp] 102 / 6e-27 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10029458 [exp] 108 / 7e-27 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 108 / 1e-26 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10005956 [exp] 107 / 1e-26 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10017313 [exp] 106 / 2e-26 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10040305 [exp] 107 / 3e-26 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10003207 [exp] 106 / 3e-26 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G038800.3 pacid=42794478 polypeptide=Potri.004G038800.3.p locus=Potri.004G038800 ID=Potri.004G038800.3.v4.1 annot-version=v4.1 ATGGGGTTGAGTTCTAAGCAGGTTACTAGTAACGGGTTAGATTGGAGCCAGACCCTATTGCAGGAACGGACTTTGGAGCTGCCTAAACCTCCTGCAATAA GGAGGCAACAGCAGCAAAACCAGCTGCAATCCGAGTCCTTGAAGTGTCCAAGGTGTGAGTCAACAAACACAAAGTTCTGTTACTACAACAACTACAACAA GTCACAGCCTAGACATTTTTGCAAGACTTGCAAGAGACACTGGACTAAAGGTGGTACCCTCCGAAATGTTCCTGTTGGTGGTGGCCGGAAAAACAAGAGG CCGAAAACATCAAAAACAAATGCTGACACCACCACCTCCACAAACACAGCAAGCACCGCTGCTCCAAGAACCGATAATAGCAACAATATGATCAATAGGG TTAACCCCCAGCAGCCAATTCAAGCTCAGCAACAAAAGCAGAATCTTCCTGATCTTGTACTTGGTGATCAAAAGAATTTATCTGGAATTCTGTATCAAGC AATGATCAATCCACCATCTTCAGTTCTGCAACAGAATTCAATCAGCTGCAACAACTTGGATACCAAAAGTTTCAACACCAACAACAATGGTGTCCTTTTG GGTTCATCTTTGTCTCTACCTCAAATTCAAGGCTCCCTCTTTCCTTGTCCAAGTTCTTTTGACACACACCCATCTTTAATTTGCACCAGCTCCTTTCAGC CCTTAAATGTTTATAACTACTCGGGAGAATCCATGGAGGACTCAACCATCACCACCATCATGCCTTCCACAAGTAGCACTATCGCTCAACCATGGCAAGT GCCAAATACAAGCAGTGGAATGGACATGACAAATTACTGGAATTGGGATGATATAGAGAATTATGTCTCTACTGATCTCAATGTCACATGGGATGATTCT GAAATCAAACCATAA
AA sequence Show only first row Show all	>Potri.004G038800.3 pacid=42794478 polypeptide=Potri.004G038800.3.p locus=Potri.004G038800 ID=Potri.004G038800.3.v4.1 annot-version=v4.1 MGLSSKQVTSNGLDWSQTLLQERTLELPKPPAIRRQQQQNQLQSESLKCPRCESTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGGRKNKR PKTSKTNADTTTSTNTASTAAPRTDNSNNMINRVNPQQPIQAQQQKQNLPDLVLGDQKNLSGILYQAMINPPSSVLQQNSISCNNLDTKSFNTNNNGVLL GSSLSLPQIQGSLFPCPSSFDTHPSLICTSSFQPLNVYNYSGESMEDSTITTIMPSTSSTIAQPWQVPNTSSGMDMTNYWNWDDIENYVSTDLNVTWDDS EIKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Potri.004G038800 [exp]	0	1
AT1G76560		CP12-3	CP12 domain-containing protein...		Potri.002G002700 [exp]	4.24	0.7536
AT2G01680			Ankyrin repeat family protein ...		Potri.008G134500 [exp]	5.91	0.7372
					Potri.012G100001 [exp]	8.54	0.8056
					Potri.009G170400 [exp]	10.77	0.8055
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.015G048300 [exp]	11.22	0.7054
AT3G55140			Pectin lyase-like superfamily ...		Potri.016G080600 [exp]	16.61	0.6845
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024801 [exp]	25.65	0.7143
					Potri.006G171212 [exp]	30.39	0.7347
AT4G34320			Protein of unknown function (D...		Potri.004G150800 [exp]	31.46	0.6788
AT5G13660			unknown protein		Potri.008G051300 [exp]	36.74	0.7234

Compare expression of checked genes

Potri.004G038800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.