Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20780 647 / 0 AtPLT4 Major facilitator superfamily protein (.1) AT3G18830 412 / 5e-139 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 401 / 4e-135 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 399 / 2e-134 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 394 / 1e-132 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 390 / 7e-131 AtPLT3 Major facilitator superfamily protein (.1) AT2G43330 238 / 3e-72 ATINT1 inositol transporter 1 (.1) AT5G16150 220 / 7e-65 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G30220 203 / 3e-58 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT1G75220 196 / 3e-56 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135200 [exp] 670 / 0 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 448 / 3e-153 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 415 / 2e-140 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 410 / 5e-139 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 404 / 2e-136 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 382 / 8e-128 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 247 / 1e-75 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 236 / 2e-71 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 213 / 6e-62 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018581 [exp] 635 / 0 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10031637 [exp] 583 / 0 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 579 / 0 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10011288 [exp] 438 / 2e-149 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 438 / 2e-149 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 431 / 4e-146 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10023640 [exp] 409 / 3e-138 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 406 / 8e-137 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 401 / 7e-135 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 397 / 3e-133 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.004G039100.1 pacid=42795492 polypeptide=Potri.004G039100.1.p locus=Potri.004G039100 ID=Potri.004G039100.1.v4.1 annot-version=v4.1 ATGGGGGTGCAAGAAAATGGGAATGGGATTGTGGGGGGAAAGAACAAGTACAAGAGGATGGATTCTGATGCGTTAGAAGAAGATATTGTGTTGTCAAATA ATCTTCAAGATCAAGAGGGTGTTTTTGTTGAGAAAAGGGATACAAGGATTTATCTTCTTGCCTGTGCTATCTTTGCATCTCTCAATTCTGTACTTTTGGG ATATGATGTGGGTGTTATGAGCGGAGCAATTTTATTCATCAAAGAAGATCTTAAGATATCTGAGGTACAAGAAGAAGTTCTTGTTGGAATTTTAAGCATA ATTTCGCTTTTGGGTAGTTTAGCTGGAGGAAAAATGTCAGATGCCATCGGTCGCAAGTGGACGATAGCCTTCGCAACATTTGTTTTTCAGTCAGGAGCTG CTGTAATGGCTCTTGCTCCTTCGTTTACAATTCTGATGACAGGAAGACTCTTGGCTGGCGTGGGGATAGGCTTTGGGATCATGATAGCGCCAGTGTACAT TGCAGAGATATCACCCACTGCTGTTAGGGGATCCCTCACCTCCTTTCCTGAAATTTTTATAAATCTAGGAATCCTTCTTGGATACATTTCCAACTATGCT TTTTCAGGACTACCAGTACATATAAACTGGAGGGTTATGCTTGGCATAGGAATTCTTCCCTCAATCTTTATGGGAGTTGCTCTGTTTGTGATCCCTGAAT CCCCAAGGTGGTTGGTGGGGCAGAACAGAATCGAAGAAGCAAGAGCTGTGCTGTCAAAAACGAATGATAGTGAAAAAGAAGCGGAGGAAAGATTGGCTGA GATACAACTGGCTGCTGACCTTGCTAATTCTGAGAAGCATGAAGCAAAGGCAGTGTGGCAAGAATTATTAAAACCTTCACCTGCAGTTCGAAAGATGCTG ATTACTGGTTGTGGAATACAGTGTTTCCAACAAATTACAGGTATTGATGCAACAGTCTACTATAGCCCCACGATTTTTAAGGATGCTGGGATCAAGAGCG AGACTCATCTACTTGCTGCAACTGTTGCTGTTGGGTTTACCAAAACTATTTTTATCTTAATAGCTATATTTCTCATTGACAAAGTGGGTAGAAAACCTTT GCTTTACATAAGCACCATTGGAATGACTGTCAGCTTGCTTTCTCTGAGCCTTACTCTATCTTTCATGAGTGATGAGAAATTTGGGATTGAATTGGCAATT TTATCAGTCTGTGCGAATGTAGCATTCTTCTCTGTAGGTATTGGGCCTATTTGTTGGGTTTTGTCATCTGAAATCTTCCCTCAAAGGCTTCGAGCTCAAG CATCAGCTCTCGGGGCAGTGGGCAGTAGGGTCAGTAGTGGTGCCGTTTCTATGTCCTTCCTCTCAGTGTCTGCTGCAATCACAGTTGGAGGAACCTTCTT TGTATTTTCATTGATTTCAGCTCTTTCTGTTGCTTTTGTCCATACATGTGTCCCGGAAACAAAAGGCAAGTCTTTGGAGCAAATTGAAATGATGTTTCAA GATGAAGGAGAGTTGCAAAGAGGTGAAGTGGAATTGGGAGATGTAGAAGTACAGAGACTGGTGCAGAAAGAATGA
AA sequence Show only first row Show all	>Potri.004G039100.1 pacid=42795492 polypeptide=Potri.004G039100.1.p locus=Potri.004G039100 ID=Potri.004G039100.1.v4.1 annot-version=v4.1 MGVQENGNGIVGGKNKYKRMDSDALEEDIVLSNNLQDQEGVFVEKRDTRIYLLACAIFASLNSVLLGYDVGVMSGAILFIKEDLKISEVQEEVLVGILSI ISLLGSLAGGKMSDAIGRKWTIAFATFVFQSGAAVMALAPSFTILMTGRLLAGVGIGFGIMIAPVYIAEISPTAVRGSLTSFPEIFINLGILLGYISNYA FSGLPVHINWRVMLGIGILPSIFMGVALFVIPESPRWLVGQNRIEEARAVLSKTNDSEKEAEERLAEIQLAADLANSEKHEAKAVWQELLKPSPAVRKML ITGCGIQCFQQITGIDATVYYSPTIFKDAGIKSETHLLAATVAVGFTKTIFILIAIFLIDKVGRKPLLYISTIGMTVSLLSLSLTLSFMSDEKFGIELAI LSVCANVAFFSVGIGPICWVLSSEIFPQRLRAQASALGAVGSRVSSGAVSMSFLSVSAAITVGGTFFVFSLISALSVAFVHTCVPETKGKSLEQIEMMFQ DEGELQRGEVELGDVEVQRLVQKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.004G039100 [exp]	0	1
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.005G004900 [exp]	1.00	0.9381
AT1G06890			nodulin MtN21 /EamA-like trans...		Potri.013G154800 [exp]	1.41	0.9231
AT1G02500		METK1, AtSAM1, ...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.010G153500 [exp]	5.74	0.8603	Pt-SAMS.3,AdoMet3
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.007G031700 [exp]	8.66	0.8934
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.017G130600 [exp]	8.66	0.8947
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.012G082200 [exp]	9.38	0.8513
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.013G117900 [exp]	10.00	0.8939
AT3G54040			PAR1 protein (.1)		Potri.006G094300 [exp]	11.22	0.8686
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.001G020600 [exp]	11.83	0.8650
AT3G05725			Protein of unknown function (D...		Potri.005G019900 [exp]	20.39	0.8655

Compare expression of checked genes

Potri.004G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.