Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61050 392 / 6e-134 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 350 / 1e-117 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 340 / 6e-114 alpha 1,4-glycosyltransferase family protein (.1) AT2G38150 332 / 2e-110 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 321 / 1e-106 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 142 / 9e-37 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047700 [exp] 755 / 0 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.016G114200 [exp] 382 / 8e-130 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 266 / 1e-87 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 115 / 3e-27 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011206 [exp] 426 / 2e-146 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 336 / 5e-112 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 332 / 2e-110 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 313 / 2e-103 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 312 / 2e-102 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 311 / 5e-102 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 267 / 3e-85 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 240 / 9e-70 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 137 / 1e-34 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 134 / 2e-33 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF04488 [poplar] [flax] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [poplar] [flax] PF04572 [poplar] [flax] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Potri.004G039300.1 pacid=42795637 polypeptide=Potri.004G039300.1.p locus=Potri.004G039300 ID=Potri.004G039300.1.v4.1 annot-version=v4.1 ATGTACCACCAGATCACCAAGCTTAAACAGAATTGTTTTGTCTGTGTTAAACAGTTGCAAAACATAAAAAGATCAATCTTTGCCTCTCTCATTTGCTTAC CAACTTCACTCCTTGCTCTTATATTCTTTCTCCTACTTTTGTACAATGGTTTCGCTGTTTTCTACGTTCACCTTCCCTTTCCCTCCAAACCTCAGCCAGA ACCCGCCAATTTCTCCAAGGCCAATCTTGCTGGAAATTCACTTAAAAAGCTCCCATCTTCAGTGATGTATGCAGTTAAAGAAGACACACCATCAGTTATT TTAAAGACCCTTTTGCCTCTCTTGCAAAATCCAGCCATTTCAGTGACACCAATTAATCATTCTGTGGTTTTGAAGCCAAAGAAGGCTCATGGATACAAAG CTGTGAAGAGAATGCTGAGTTCTGGAGACAATTCAAAACAGTTTTCGACAAGAATAAGAGACTTCCTTGGGAATCGTGGTTGTAAGGTTAGGTTCTTTAT GACATGGATTTCTTCTTTGAAGCCATTTGGTGATAGAGAGTTGTTTGCTATTGAGAGCTTGTTCAAGTCCCATCCATATGCTTGTTTGGTTATTGTTTCC AATTCCATGGAGGCTGAAAGTGGGAGTCTTGTTTTAAAGCCATTTCTTGACAAAGGGTTTAAATTGATTGCAATTAAGCCTGATTTTGATTATATATTCA AGGATACTCATGCTGAGAAATGGTTTAAAGGGTTAAAGAAAGGGAATGTTAGCCCTGGAGAAGTTTCTTTGGGTCAAAATATGTCTAATTTGCTTAGGCT TGCTTTGCTGTATAAGTTTGGTGGGATTTATATGGACACTGATGTGATAGTGTTGAAGACACTTACCAAATTGAGAAATGCTATAGGGGCACAAAGTATT GATCTTGAAAATGGGAAATGGAGCAGATTGAATAATGCCGTGTTGATTTTTGACAAGAAGCATCCTTTACTCTTCAAATTCATTGAAGAATTTGCACTCA CATTCGATGGAAACAAGTGGGGTCATAACGGTCCTTATCTGGTTTCAAGAGTTGTTTCAAGAGTCAATAGAACGCCTGGGTTTAACTTCACTGTATTGCC TCCATCTGCATTTTATCCGGTGAATTGGAGTCGAATTAAAAGTCTCTTTAAGGGGCCTGAAGGTAAGGCCCATTCAACATGGCTGCGTAAAAAACTTGAG CAGATTAAAAGTGAAAGTTTTGCAGTTCACTTATGGAACAGGCAGAGCAGAAAGATCAAGGCCGAAAGTGGAAGCATTATCAATCATATAATGTTGGATT GTTGTGTTTTCTGCAATTCTTCGAGCTCAAGTTTGTAA
AA sequence Show only first row Show all	>Potri.004G039300.1 pacid=42795637 polypeptide=Potri.004G039300.1.p locus=Potri.004G039300 ID=Potri.004G039300.1.v4.1 annot-version=v4.1 MYHQITKLKQNCFVCVKQLQNIKRSIFASLICLPTSLLALIFFLLLLYNGFAVFYVHLPFPSKPQPEPANFSKANLAGNSLKKLPSSVMYAVKEDTPSVI LKTLLPLLQNPAISVTPINHSVVLKPKKAHGYKAVKRMLSSGDNSKQFSTRIRDFLGNRGCKVRFFMTWISSLKPFGDRELFAIESLFKSHPYACLVIVS NSMEAESGSLVLKPFLDKGFKLIAIKPDFDYIFKDTHAEKWFKGLKKGNVSPGEVSLGQNMSNLLRLALLYKFGGIYMDTDVIVLKTLTKLRNAIGAQSI DLENGKWSRLNNAVLIFDKKHPLLFKFIEEFALTFDGNKWGHNGPYLVSRVVSRVNRTPGFNFTVLPPSAFYPVNWSRIKSLFKGPEGKAHSTWLRKKLE QIKSESFAVHLWNRQSRKIKAESGSIINHIMLDCCVFCNSSSSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Potri.004G119700 [exp]	1.41	0.9799
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	3.74	0.9757
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	4.58	0.9794
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	6.00	0.9792	Pt-CYP93.2
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	6.92	0.9752
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	8.12	0.9679	CYP716B4
AT5G06070	C2H2ZnF	RAB, RBE	RABBIT EARS, C2H2 and C2HC zin...		Potri.010G199800 [exp]	9.16	0.9633
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	9.74	0.9762
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	9.79	0.9758
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	11.61	0.9749

Compare expression of checked genes

Potri.004G039300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.