Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21220 359 / 2e-125 AtLpxD2 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1) AT4G05210 328 / 5e-113 AtLpxD1 lipid X D1, Trimeric LpxA-like enzymes superfamily protein (.1) AT4G29540 54 / 3e-08 AtLpxA bacterial transferase hexapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150200 [exp] 55 / 2e-08 AT4G29540 396 / 3e-138 bacterial transferase hexapeptide repeat-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020067 [exp] 405 / 7e-144 AT4G21220 342 / 3e-118 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1) Lus10006753 [exp] 76 / 2e-17 AT4G21220 61 / 3e-12 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1) Lus10032684 [exp] 64 / 1e-11 AT4G29540 468 / 8e-167 bacterial transferase hexapeptide repeat-containing protein (.1.2) Lus10008565 [exp] 44 / 7e-05 AT4G29540 447 / 6e-158 bacterial transferase hexapeptide repeat-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats)
Representative CDS sequence Show only first row Show all	>Potri.004G039400.3 pacid=42796209 polypeptide=Potri.004G039400.3.p locus=Potri.004G039400 ID=Potri.004G039400.3.v4.1 annot-version=v4.1 ATGATGGCAATCTCTGCCAAAAGATTATCCCGTCTCATTTCCTTAAAGAGACCAATCAAACACTCTGGTGTCTCAAGTTACTCAGCATCCTCCATTAATC AAATTGAATATTCAAAATGGAACAATGGAGGTGGAACTTTCCACAAATCAGCTTGCATCGACCCAACAGTGTTAATTGAAATTGGCGCAGTAGTTCATTC AAAAGCTGTGCTGGGCACTAATGTTCATGTGGGATCAGGAACTGTTGTAGGACCTGAAGTTACTATTGGTCACTCTACAAAGATAGGGTATAATGTTGGC CTCAGTAATTGTAGGATAGGGGATTCGTGTGTAGTTCACCATGGAGTATGCATTGGTCAAGATGGATTTGGGTTTTTTGTGGATGACAAAGGCAACATGA TGAAGAAGCCTCAACTGCTGAATGCTATCATAGGAGATCATGTGGAGATTGGGGCAAATACATGCATTGACAGGGGAAGTTGGAGAGACACAGTTATTGG GGATCATTCAAAGTTAGATAATTTAGTCCAAATTGGTCATAATGTGGTTATAGGAAAGGGTTGCATGCTTTGTGGACAGGTTGGGATTGCAGGCTCAGTG ACCATGGGAGACTACGTCACTTTAGGAGGAAGGGTTGCAGTTCGTGATCATGTATCTATTGCATCGAAGGTCCGGCTTGCTGCTAATAGCTGTGTGACCA AAGACATTAGAGAGCCTGGGGATTATGGTGGCTTCCCTGCAGTTCCAATTCATGAATGGCGAAGACAAGTTGCTAGTCGCTACCGGATTTCAAAGAAGGC TATTCTATAG
AA sequence Show only first row Show all	>Potri.004G039400.3 pacid=42796209 polypeptide=Potri.004G039400.3.p locus=Potri.004G039400 ID=Potri.004G039400.3.v4.1 annot-version=v4.1 MMAISAKRLSRLISLKRPIKHSGVSSYSASSINQIEYSKWNNGGGTFHKSACIDPTVLIEIGAVVHSKAVLGTNVHVGSGTVVGPEVTIGHSTKIGYNVG LSNCRIGDSCVVHHGVCIGQDGFGFFVDDKGNMMKKPQLLNAIIGDHVEIGANTCIDRGSWRDTVIGDHSKLDNLVQIGHNVVIGKGCMLCGQVGIAGSV TMGDYVTLGGRVAVRDHVSIASKVRLAANSCVTKDIREPGDYGGFPAVPIHEWRRQVASRYRISKKAIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Potri.004G039400 [exp]	0	1
AT1G01290		CNX3	cofactor of nitrate reductase ...		Potri.014G099500 [exp]	2.44	0.7310
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.003G114000 [exp]	10.58	0.6274
AT4G24830			arginosuccinate synthase famil...		Potri.010G239000 [exp]	12.64	0.6964
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Potri.001G239900 [exp]	13.22	0.6920
AT3G02820			zinc knuckle (CCHC-type) famil...		Potri.010G097400 [exp]	19.74	0.6572
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.010G082900 [exp]	20.00	0.6934
AT2G45730			eukaryotic initiation factor 3...		Potri.002G023300 [exp]	20.97	0.6687
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.005G241700 [exp]	21.49	0.6941
AT3G12410			Polynucleotidyl transferase, r...		Potri.006G031400 [exp]	23.21	0.6613
AT5G61510			GroES-like zinc-binding alcoho...		Potri.001G140600 [exp]	23.95	0.6712

Compare expression of checked genes

Potri.004G039400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.