Plant FIBer expression Database

Potri.004G039500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61040 694 / 0 VIP5 vernalization independence 5, plus-3 domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G047900
[exp]
998 / 0 AT1G61040 687 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011205
[exp]
676 / 0 AT1G61040 681 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
Lus10018476
[exp]
670 / 0 AT1G61040 669 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03126 Plus-3 Plus-3 domain
Representative CDS sequence
>Potri.004G039500.2 pacid=42794730 polypeptide=Potri.004G039500.2.p locus=Potri.004G039500 ID=Potri.004G039500.2.v4.1 annot-version=v4.1
ATGGCTGATTTAGAAAATTTGCTGCTTGAGGCAGCGGGAAGGACTGGGAAATCAGGAAGAAACAGGAATTCGATACTGCCTTCCAGGAGGCGAAAACGCG
AGGGTTCATATTCTGATGGTGGAAGTGATTCTAGAGATGATGATTCTGATGATGATCGCGGGTATGCGAATAGGAAGCCATCAGGGTCTCAAGTGCCTTT
GAAGAAGAGATTGGAGACTAACGAGAGGGATGGGGAGGAGGGTAGTCAGGATGAAGGTGATTATGATGGTGGTGGTTCGGATCGTGAGGGTGGAAGTAGT
GATGAATCTGATATTGGTGATGATCTTTACAAAGATGAGGATGATAGGAAGAAGCTTGCTCAAATGAGTGAACTTGACAGGGAGTTGATATTGGCGGATC
GAGCAGACAAGAAAGGGGATAAGCATTTGACTGAGAAGATTAGATTGAAAAGGGATAATGATAAGCCAACCCGATCTAGAAAAGAGACTCCGCCTCTTCC
ATCGTCTCGTGGAGTGCGTTCATCAGCTAGGTCTGCTGACAGGGCAGCTGCTAAAGATGATGCATTGAATGAATTGAGAGCAAAACGTTTAAAGCAGCAG
GATCCTGAGGCTCATCGCAAGTTGAGGGATGTGTCTAGAGGATCCGCTGGCAGCCGGGGTTTTTCACAAGTCAAGAAGAATAATTTCACTTCAGCAAGTC
TGAGTAGCTCCAGTAGTGAGAGTGGAAGTAGATCTCACAGTGAGGATGAAGGGTCAACAGGTGATGGTGGAATGGCAGACAGTGATGAGGATGTGGAACC
CGGGTCCAAGGGACCAACTTATGAAGATATAAAAGAAATTACCATTCGGAGAACCAAACTTGCGAAATGGTTTATGGAGCCTTGGTTTGAAGAATTGATT
ATTGGTTGTTTCGTGAGGGTTGGGATAGGTAGGTCGAAGTCTGGGCCCGTGTACAGGCTCTGCATGGTCCGGAATGTTGATGCTGCTGAACCTGACAAGC
CATACAAGCTGGAGAACAAATCAACTTATAAGTATTTGAATGTTACTTGGGGTGCTGACACCTCTGCTGCCAGGTGGCAGATGGCTATGGTTTCAGATTC
TGGACCAACTGAGGAAGAGTATAAACAATGGGTTAGAGAGGTGGAGTGTGGTGGTGGCAGGTTGCCAAGCAAACAGGATATCTTGGAAAAGAAGGAGGCC
ATAAGAAAATCAAACACTTTTGTGTACTCGGCAGCCACTGTGAAGCAGATGTTGCAGGAGAAAAAATCTGCCTCGTCGAGACCATTAAATGTCGCTGCTG
AGAAGGACAGGTTGAGGAGGGAGTTGGAAATTGCACAGAGCAAGCATGACGAGGCAGAGGTAGAGAGGATCAATGCAAGAATTGAGGAACTGGAGGCATC
TCGGCACGCTAAGGTGAAAGATGCTAAGGCTATTAGGTTGGCAGAAATGAACAGAAAGAACAGAGTTGAGAATTTTAGAAATGCATCCGAAATGAAGCCA
GTAAATACAGGTCTAAAAGCCGGGGAAGCTGGGTATGATCCATTTTCAAGGAGATGGACTAGGTCAAGGAATTATTATGTTTCAAAACCTGCTGAAGCAG
ATGATCCTGTTGCAACTAAAATTAGCGAGGCAAATGAGACAGTGGCAGTTGCAGCTAGTAATCAAGTTGTAGCAGGGGTGATGTCAGAGGCTGGTGTGGC
TGCTACAGAAGCTGCCTTGGAAGCGGCAGCTGATGCTGGGAAGTTGGTTGATACCAGTGCTCCTGTGGATCAAGGCACTGAGTCAAATACAATGCACAGC
TTTGAGCTTGAAATCTCACTTATTGCACTGCAGGAGTTTGGAGGACCTCAGGGCGCTCAGGCAGGGTTCATGGCTAGGAAACAGAGGATTGAAGCAACTG
TTGGATGCCGAGTCCCTGAGAATGATGGGAGAAGACACGCACTGACCTTGACGGTTGGTGACTACAAGAGAAGAAGAGGCCTTCTCTGA
AA sequence
>Potri.004G039500.2 pacid=42794730 polypeptide=Potri.004G039500.2.p locus=Potri.004G039500 ID=Potri.004G039500.2.v4.1 annot-version=v4.1
MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSS
DESDIGDDLYKDEDDRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSADRAAAKDDALNELRAKRLKQQ
DPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASLSSSSSESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPWFEELI
IGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEA
IRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKDAKAIRLAEMNRKNRVENFRNASEMKP
VNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADDPVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTESNTMHS
FELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDYKRRRGLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61040 VIP5 vernalization independence 5, ... Potri.004G039500
[exp]
0 1
AT5G56210 WIP2 WPP domain interacting protein... Potri.011G169000
[exp]
1.00 0.8894
AT5G41950 Tetratricopeptide repeat (TPR)... Potri.011G050600
[exp]
1.73 0.8761
AT3G58630 Trihelix sequence-specific DNA binding ... Potri.001G113600
[exp]
3.87 0.8390
AT3G57990 unknown protein Potri.006G191800
[exp]
6.00 0.8745
AT3G07790 DGCR14-related (.1) Potri.014G164200
[exp]
6.63 0.8832
AT1G30460 C3HZnF CPSF30, ATCPSF3... ARABIDOPSIS THALIANA CLEAVAGE ... Potri.011G089901
[exp]
10.67 0.8625
AT3G59670 unknown protein Potri.007G051100
[exp]
11.13 0.7965
AT4G16430 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) ... Potri.002G042000
[exp]
11.22 0.8540
AT5G11530 EMF1 embryonic flower 1 (EMF1) (.1) Potri.006G240500
[exp]
11.53 0.8250
AT2G26660 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAI... Potri.018G028200
[exp]
13.03 0.7887

Potri.004G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.