Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11060 662 / 0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) AT1G61030 598 / 0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049300 [exp] 1283 / 0 AT1G11060 674 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001211 [exp] 705 / 0 AT1G11060 660 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10005857 [exp] 669 / 0 AT1G11060 653 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10011196 [exp] 595 / 0 AT1G11060 614 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10018478 [exp] 588 / 0 AT1G11060 611 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07814 [poplar] [flax] WAPL Wings apart-like protein regulation of heterochromatin
Representative CDS sequence Show only first row Show all	>Potri.004G039900.5 pacid=42796016 polypeptide=Potri.004G039900.5.p locus=Potri.004G039900 ID=Potri.004G039900.5.v4.1 annot-version=v4.1 ATGTTCGTTAGAACGTACGGTCGGCGAAACCGAGGGGGAGACGACACCGTGTCTGACCATAATTACTCCTTCAGTGAATCTCAAGAAAGCCCATCCAATC AAGATTTCTTCAGCAGTAACTTCCCTTTCTCATCTCAAGAATCCACCTCTTATTCTCTCGATCCCGATCCCTACAGTTTCGACGAAAATCCCATCCCAAG CGGTGTCGTTCCAAGGAAATCGAAGAAGGCAAGGCATAGTAAGTCAAAATCTGAGAGACCCAATAGTGGAAAGATTGGGAATTCAAATGTCTTGACTAGT TCGACGACGTTGATGGAGGCGCAAGAGTTTGGGGAAATGATGGAGCATGTTGATGAGGTTAACTTTTCACTTGATGGGTTAAAGAAAGGACAGCCTTTAA GGATTAAGAGAGCTAGTTTGTTGTCTTTGTTAAGAGTTTGTGGGACTCAACAACAGAGACGGCTTTTGAGGACTCAAGGGATGGCCAAGACAATAATTGA TGCTATTTTGAGCCTCAGCTTGGATGATTCAACTAGCAATCTGGCTGCTGCTGCACTCTTCTATGTTTTGACTAGTGATGGTCAAGATGAACATGTTTTA GAGTCACCAACTTCCATTCATTTTCTTATTAAATTGTTAAAACCCATCATTTCCACTGCTACTGAAGATAAGGCTCGAAATATAGGCAGTAAGCTTTTAT CATTACGCAAGGAGTCTGACATCTTACGAGATACAAGTAAGCTGGCAGATTCTACCTCCACTGCCATTGCTGCCAAAGTTCAAGAAATTCTTGTTAATTG CAAGGAAATGAAGTCACATTGCGGTGATGATAGTAGAATGGAGAGGCCAGAATTGTCTCCAAAATGGATTGCATTGTTATCCATGGAGAAAGCTTGTTTA TCTAAGATATCCTTTGAAGATACATCTGGCATGGTAAGGAAGACAGGGGGCAACTTTAAGGAGAAGTTACGTGAGCTTGGAGGACTTGATGCTGTCTTTG AGGTCATCATGAATTGTCACTCTGTTATGAAGAGGTGGACAGAACATCATTCACCTTCCATTCAGGAACATGACATGCATCTGTCAAGCCTGGTGCTGCT TCTGAAATGTTTGAAAATTATGGAAAATGCTACATTCTTAAGTAAAGATAACCAGACTCATTTACTTGGAATGAGGGGGAACTCAGATTCTCATGGGCAT CGGATATCTTTTACTAAAATCATTATAAGCGTCATCAAAATTCTATCCAGTCTTCATCTGCTCAAGAGTTCTGCTGCTGCTTCCAGTGTCGGAAACCGTT GTAGTCTTTCTGAAAGAAGTGATCATGCTTCTGATTTGGTCTTAATTGATGACTACAGAGCAGTAGACAGCAATGGAGTTATAAGCATCAGTTCTTCTCC GAATAACTGCAATGAAGCGAGGACCTCCTCTGAGAAAAGCTTAAATGTATCTCAGAATTCCATGGCCCGGTTGAGGCTTTCTGCCTCCAGTTCTGAAACT ACCACACCATTTATTGGAAATACTTGTCAACTGAAGATGAGAATACATCCTTCCATGTCCAGCTCATGTAGCGAGACATTGAGGAGTTATGAGAGCAATG GGTCAAGGACCATATTTGGCCTTGTTGAGAAACCTAATTGTAGGAAAGATGCCAGGAGTGAGCTCTTAGATGATAGCCAAGATCCGTATGCATTTGATGA AGATGATTTTCAGCCCTCAAAGTGGGACTTGCTCTCTGGGAAACAGAAAATCTCTCGAACTCATAATGGTAGGGTAAACTCCAGAGAAGTTGAAAATGGG TATCAATATAAGCTACCGAGTCAGGAAGAATTAAGTAATGGTGATAATTGGCTACAAAAATCAAGTAATGGTGAAAATTGCCTACAAAAATCAAGTAATG GTGAACAATATCATTCACAGAAAAGCTCTCATTGCAGTGTTCCTGATGAAGAACATTCCAGCCTTCTGGCAGACTGTCTTCTTACTGCTATCAAGGTTCT AATGAATTTAACAAATGACAATCCTATTGGCTGTCAACAAATTGCTGTTTGTGGAGGGCTGGAGACTATGTCTACTCTGATTGCTGGCCACTTCCCCTCA TTCAGCTCATCTATATCCCTTGTTGGTGAGATGCAAGAGGACGGTTCAAGCATTGAACCTGACAATCAGAATGATGTTCATCTCACTGATCAAGAGTTGG ATTTTCTTGTTGCTATATTGGGCCTACTTGTGAACTTGGTAGAAAAGGACGGGGATAACAGATCAAGGCTCGCTGCAACAAGTGTTCCTCTGTCAATCTT GGAAGGGTCAGAAGATGAGAGTCGCAAGGATGTAATTCCACTACTGTGCTCCATCTTCCTAGCCAACCAAGGTGCAGGTGATGCAGCTGGAGAAGGAAAT GTTGTGTCATGGAACGATGAGGCAGCTGTTTTACAAGGAGAGAAAGAAGCAGAGAAGATGATTGTCGAAGCTTATTCAGCACTGGTACTTGCATTCCTAT CAACTGAAAGCAAGAGCATACGTGATTCCATTGCTGATTGCCTCCCAAATCACAACCTGGTTATCCTTGTTCCTGTGCTGGAGAGATTTGTGGCCTTTCA CTTGACATTAAACATGATATCACCGGAGACTCATAAAGCTGTGACCGAAGTGATCGAATCATGTAGAATCCGATGA
AA sequence Show only first row Show all	>Potri.004G039900.5 pacid=42796016 polypeptide=Potri.004G039900.5.p locus=Potri.004G039900 ID=Potri.004G039900.5.v4.1 annot-version=v4.1 MFVRTYGRRNRGGDDTVSDHNYSFSESQESPSNQDFFSSNFPFSSQESTSYSLDPDPYSFDENPIPSGVVPRKSKKARHSKSKSERPNSGKIGNSNVLTS STTLMEAQEFGEMMEHVDEVNFSLDGLKKGQPLRIKRASLLSLLRVCGTQQQRRLLRTQGMAKTIIDAILSLSLDDSTSNLAAAALFYVLTSDGQDEHVL ESPTSIHFLIKLLKPIISTATEDKARNIGSKLLSLRKESDILRDTSKLADSTSTAIAAKVQEILVNCKEMKSHCGDDSRMERPELSPKWIALLSMEKACL SKISFEDTSGMVRKTGGNFKEKLRELGGLDAVFEVIMNCHSVMKRWTEHHSPSIQEHDMHLSSLVLLLKCLKIMENATFLSKDNQTHLLGMRGNSDSHGH RISFTKIIISVIKILSSLHLLKSSAAASSVGNRCSLSERSDHASDLVLIDDYRAVDSNGVISISSSPNNCNEARTSSEKSLNVSQNSMARLRLSASSSET TTPFIGNTCQLKMRIHPSMSSSCSETLRSYESNGSRTIFGLVEKPNCRKDARSELLDDSQDPYAFDEDDFQPSKWDLLSGKQKISRTHNGRVNSREVENG YQYKLPSQEELSNGDNWLQKSSNGENCLQKSSNGEQYHSQKSSHCSVPDEEHSSLLADCLLTAIKVLMNLTNDNPIGCQQIAVCGGLETMSTLIAGHFPS FSSSISLVGEMQEDGSSIEPDNQNDVHLTDQELDFLVAILGLLVNLVEKDGDNRSRLAATSVPLSILEGSEDESRKDVIPLLCSIFLANQGAGDAAGEGN VVSWNDEAAVLQGEKEAEKMIVEAYSALVLAFLSTESKSIRDSIADCLPNHNLVILVPVLERFVAFHLTLNMISPETHKAVTEVIESCRIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11060			WAPL (Wings apart-like protein...		Potri.004G039900 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.012G097300 [exp]	1.41	0.7350
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.005G151500 [exp]	4.69	0.7378
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.015G083800 [exp]	6.32	0.6931
AT5G65170			VQ motif-containing protein (....		Potri.005G166100 [exp]	7.48	0.7240
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.015G020800 [exp]	10.00	0.7235
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Potri.019G087000 [exp]	12.00	0.7192
AT5G05450			P-loop containing nucleoside t...		Potri.010G184132 [exp]	18.24	0.7163
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	19.59	0.6811
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	19.79	0.7031
AT1G72300			Leucine-rich receptor-like pro...		Potri.003G074000 [exp]	20.92	0.7286

Compare expression of checked genes

Potri.004G039900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.