Plant FIBer expression Database

Potri.004G040000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21670 1139 / 0 FRY2, FLP1, ATCPL1, CPL1 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
AT5G01270 563 / 0 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G049400
[exp]
1668 / 0 AT4G21670 1108 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
Potri.016G114600
[exp]
587 / 0 AT5G01270 923 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Potri.006G099402
[exp]
198 / 4e-58 AT5G01270 294 / 2e-95 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Potri.006G099302
[exp]
186 / 4e-51 AT5G01270 363 / 6e-119 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018479
[exp]
1294 / 0 AT4G21670 1100 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
Lus10011195
[exp]
1216 / 0 AT4G21670 1044 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1)
Lus10027766
[exp]
541 / 2e-174 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0196 DSRM PF00035 dsrm Double-stranded RNA binding motif
CL0137 HAD PF03031 NIF NLI interacting factor-like phosphatase
Representative CDS sequence
>Potri.004G040000.5 pacid=42796614 polypeptide=Potri.004G040000.5.p locus=Potri.004G040000 ID=Potri.004G040000.5.v4.1 annot-version=v4.1
ATGTATAAATCAGTGGTGTATAAAGGAGATGAGTTACTGGGAGAAGTAGAAATATACGCACAAGAACAACAGCAAGAAGAAGAAGAGAACAAGAACAAGA
AGAAGAGAGTGATTGATGAGATAGTGAAGGAAATCAGAATAAGCCATTTCTCACAAACAAGTGAGAGATGTCCACCACTTGCAGTGCTTCATACAATTAC
ATCTATTGGTGTTTGCTTCAAAATGGAAGAGTCAACTTCATCATCAACAACAAAGATCTCTCAACAAGAATCGCCGCTTCATCTTTTGCACTCCTCCTGT
ATCCAAGAAAACAAGACTGCAGTGATGCATCTGGGAGGGGAGGAGCTCCATTTGGTTGCAATGCCCTCCAGGAGTAATGAAAGACAGCATCCATGTTTCT
GGGGATTCAGTGTTGCACCAGGACTTTATGACTCTTGTCTTGTCATGCTGAACCTCAGATGCCTGGGCATTGTATTTGATCTTGATGAAACTCTCATAGT
TGCAAATACAATGCGCTCATTTGAAGATAGAATTGATGCTTTGCAGCGGAAAATAAGCACTGAGGTGGACCCGCAGCGCATTCTTGGTATGCTGTCAGAG
GTCAAGAGGTATCACGATGACAAGAACATTTTGAAGCAATATGTGGAAAATGATCAGGTTGTTGAAAATGGAAAGGTGATCAAAACACAGTCTGAGGTTG
TTCCAGCCCTGTCTGACAACCATCAACCTATGGTTCGCCCCTTGATACGGTTGCAAGAGAAGAACATTATTTTGACTCGTATCAATCCGCAGATTCGTGA
TACAAGTGTGCTTGTGAGGTTGAGACCTGCTTGGGAGGATCTGAGAAGCTACTTGACTGCAAGAGGGCGCAAGCGCTTTGAGGTTTATGTTTGCACAATG
GCTGAAAGAGATTATGCTTTAGAAATGTGGAGGCTTTTGGATCCAGAGTCAAACTTGATAAACTCAAAAGAATTGCTAGATCGGATTGTGTGTGTCAAGT
CTGGTTTAAGGAAGTCCTTGTTCAATGTCTTTCAAGATGGAATATGCCATCCTAAGATGGCATTGGTGATAGATGATCGCTTGAAAGTGTGGGATGAGAG
GGATCAATCCCGTGTGCATGTTGTTCCTGCATTTGCTCCATACTATGCTCCTCAAGCTGAAGTAAATAATGCTGTTCCAGTATTGTGCGTTGCGAGAAAT
GTTGCTTGCAATGTCAGAGGTGGTTTCTTCAAAGAATTTGATGAGGGCCTTCTGCAGAAGATACCTGAGGTTGCATACGAAGATGATACTGATAATATTC
CTTCTCCTCCTGATGTGAGCAACTATTTAGTTTCAGAGGATGATGCTTCTGCTGTAAATGGAAATAGAGATCAACTTTCTTTTGATGGCATGGCAGATGC
TGAGGTTGAAAGACAGCTAAAGGAAGCAGTTTCAGCTTCTTCAGCAATCCTCTCAACTATTCCTTCAACAGTCAGTAGCTTAGATCCAAGGCTTCTTCAG
TCTCTCCAGTACACAATAGCATCTTCTTCAAGCTCGATGCCAACATCACAACCTTCAATGCTGGCATCACAACAACCAATGCCAGCATTACAACCACCAA
AGCCTCCATCACAACTATCAATGACGCCATTTCCCAACACACAGTTTCCTCAGGTGGCTCCATCAGTTAAACAATTGGGCCAGGTTGTCCCTCCAGAACC
AAGCTTGCAAAGTTCTCCTGCTCGAGAAGAGGGTGAAGTACCCGAATCTGAATTAGATCCTGATACAAGGAGGCGGCTTCTTATATTACAACATGGGCAT
GATTCAAGAGACAATGCACCAAGTGAATCTCCATTTCCTGCAAGACCTTCAACACAAGTTTCAGCTCCACGTGTGCAATCTGTTGGAAGCTGGGTTCCAG
TGGAGGAAGAGATGAGCCCAAGGCAACTGAACCGAACACCTAGAGAATTTCCTCTGGATTCAGATCCAATGAATATTGAAAAGCACCGAACTCACCATCC
ATCCTTTTTCCATAAGGTTGAGAGTAATATTCCGTCTGATAGGATGATTCATGAGAACCAAAGACAGCCAAAAGAGGCAACATATAGAGATGATCGGATG
AAGCTAAACCATTCAACATCTAATTATCCTTCCTTCCAAGGGGAGGAGAGTCCATTGAGTAGATCATCCAGTAACAGGGATCTTGACTTGGAATCTGAAC
GAGCTTTTTCAAGCACAGAAACTCCAGTTGAAGTGTTACAGGAAATTGCGATGAAGTGTGGAACCAAGGTGGAATTCAGGCCTGCTTTGATTGCTACTAG
TGATCTGCAGTTTTCCATTGAGACTTGGTTTGTAGGAGAGAAAGTTGGTGAAGGAACTGGTAAAACAAGAAGGGAAGCCCAACGCCAGGCAGCTGAGGGT
TCTATTAAGAAGTTAGCTGGCATATATATGTCACGTGTGAAGCCTGATTCTGGGCCCATGCTTGGGGATTCAAGTAGATATCCTAGTGCAAATGATAATG
GTTTCTTGGGTGATATGAATTCTTTTGGGAATCAACCATTGCTGAAAGATGAGAACATTACGTATTCAGCTACTTCAGAGCCATCCAGACTTCTGGATCA
AAGGCTGGAAGGCTCTAAGAAATCAATGGGTTCGGTCACTGCACTCAAAGAATTTTGCATGACGGAGGGTCTTGGGGTAAATTTTCTGGCACAGACTCCA
CTTTCAACTAATTCAATACCGGGAGAGGAGGTACATGCACAGGTTGAAATAGATGGACAAGTTCTGGGGAAGGGTATTGGGTTGACATGGGATGAAGCTA
AGATGCAGGCTGCTGAAAAGGCCCTTGGAAGTCTAAGAACAATGTTTGGTCAATACACACCAAAACGTCAGGGTTCCCCTAGGCTAATGCAAGGGATGCC
AAATAAACGTCTAAAGCAAGAGTTCCCACGGGTTCTGCAGCGCATGCCCTCTTCTGCTAGATATCACAAGAATGCTTCTCCTGTTCCTTGA
AA sequence
>Potri.004G040000.5 pacid=42796614 polypeptide=Potri.004G040000.5.p locus=Potri.004G040000 ID=Potri.004G040000.5.v4.1 annot-version=v4.1
MYKSVVYKGDELLGEVEIYAQEQQQEEEENKNKKKRVIDEIVKEIRISHFSQTSERCPPLAVLHTITSIGVCFKMEESTSSSTTKISQQESPLHLLHSSC
IQENKTAVMHLGGEELHLVAMPSRSNERQHPCFWGFSVAPGLYDSCLVMLNLRCLGIVFDLDETLIVANTMRSFEDRIDALQRKISTEVDPQRILGMLSE
VKRYHDDKNILKQYVENDQVVENGKVIKTQSEVVPALSDNHQPMVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTM
AERDYALEMWRLLDPESNLINSKELLDRIVCVKSGLRKSLFNVFQDGICHPKMALVIDDRLKVWDERDQSRVHVVPAFAPYYAPQAEVNNAVPVLCVARN
VACNVRGGFFKEFDEGLLQKIPEVAYEDDTDNIPSPPDVSNYLVSEDDASAVNGNRDQLSFDGMADAEVERQLKEAVSASSAILSTIPSTVSSLDPRLLQ
SLQYTIASSSSSMPTSQPSMLASQQPMPALQPPKPPSQLSMTPFPNTQFPQVAPSVKQLGQVVPPEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGH
DSRDNAPSESPFPARPSTQVSAPRVQSVGSWVPVEEEMSPRQLNRTPREFPLDSDPMNIEKHRTHHPSFFHKVESNIPSDRMIHENQRQPKEATYRDDRM
KLNHSTSNYPSFQGEESPLSRSSSNRDLDLESERAFSSTETPVEVLQEIAMKCGTKVEFRPALIATSDLQFSIETWFVGEKVGEGTGKTRREAQRQAAEG
SIKKLAGIYMSRVKPDSGPMLGDSSRYPSANDNGFLGDMNSFGNQPLLKDENITYSATSEPSRLLDQRLEGSKKSMGSVTALKEFCMTEGLGVNFLAQTP
LSTNSIPGEEVHAQVEIDGQVLGKGIGLTWDEAKMQAAEKALGSLRTMFGQYTPKRQGSPRLMQGMPNKRLKQEFPRVLQRMPSSARYHKNASPVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21670 FRY2, FLP1, ATC... FIERY 2, C-terminal domain pho... Potri.004G040000
[exp]
0 1
AT3G07610 IBM1 increase in bonsai methylation... Potri.005G091200
[exp]
1.73 0.8783
Potri.004G088000
[exp]
3.74 0.8632
AT5G53440 unknown protein Potri.012G013800
[exp]
4.69 0.8785
AT2G25730 unknown protein Potri.006G244900
[exp]
5.91 0.8749
AT1G15280 CASC3/Barentsz eIF4AIII bindin... Potri.003G056500
[exp]
8.36 0.8289
AT2G06040 unknown protein Potri.006G142200
[exp]
9.32 0.8038
AT5G51410 LUC7 N_terminus domain-contain... Potri.001G124300
[exp]
14.49 0.7964
AT4G15180 SDG2, ATXR3 SET domain protein 2 (.1) Potri.007G119300
[exp]
16.43 0.8668 SDG904
AT1G54490 ATXRN4, XRN4, E... ETHYLENE INSENSITIVE 5, ACC IN... Potri.013G070200
[exp]
17.34 0.7890
AT3G13670 Protein kinase family protein ... Potri.003G215700
[exp]
20.24 0.7563

Potri.004G040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.