Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20760 216 / 1e-67 Clathrin light chain protein (.1) AT2G40060 204 / 2e-64 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 173 / 2e-52 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049500 [exp] 375 / 3e-130 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.019G102000 [exp] 219 / 2e-68 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.016G114700 [exp] 201 / 4e-63 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.008G066800 [exp] 186 / 5e-57 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.010G190400 [exp] 179 / 2e-54 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018480 [exp] 281 / 3e-93 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10011194 [exp] 277 / 8e-92 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10018582 [exp] 181 / 4e-54 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10004389 [exp] 174 / 2e-52 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 166 / 3e-49 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10039815 [exp] 166 / 6e-49 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1) Lus10030401 [exp] 152 / 5e-44 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10037839 [exp] 113 / 4e-29 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [poplar] [flax] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Potri.004G040100.2 pacid=42795774 polypeptide=Potri.004G040100.2.p locus=Potri.004G040100 ID=Potri.004G040100.2.v4.1 annot-version=v4.1 ATGGCTGCCTTTGATGCATTTGAAGTCATTCAAGCTTCAAGTCACACTTCTTTCGATGGAGTAGACGACGAGAGCTACTCCAACTTCGCCTCTTACTCCA CCGCCGCCGGTCCTGGTGATTTCCCCGGCGGAGATGTCTCCGTCGATCACGTGAGTGGTTCTCCTGATGTGTTCGGGTTTGGATCTGATGCGGATCCGGA TTTCTCTCATCAGAGTCCGTTCGGATCGGTGCATGTAGAGAACGGGAATGGTAATGGATATAATGGAGCGGACGACGACGTTTTTGTGAGTGATGGACCG ATCCTTCCTCCACCTACTGAAATGGAGCCTGAGGAAGGTTATGCTCTTCGCGAGTGGCGTCGTCAAAATGCCATGCATCTTGAGGAAAAGGAGATGAGAG AGAAGGAGATGAGGAAACAGATAATTGAAGAAGCGGACGAGTATATACGAGGTTTCTATGAGAAGAGGAAGCTCAATATTGAGACCAACATAGCTACTAA CAGAGAAAGAGAGAAGTTGTACTTAGCCAATCAAGAGAAATTCCACAAAGAAGCCGACAAACAGTACTGGAAAGCAATAGCTGAGATCATTCCTCGTGAA GTTCCTAATATTGAGAAGAGGAGAGGCAAGAAAGAGAAGGATCAAGATAAGAAGCCATCAGTTACTGTTATCCAGGGCCCGAAGCCAGGAAAACCCACTG ATCTTTCAAGGTTGCGACAGATACTTGTTAAGCTGAAACATACACCCCCACCTCATATGATCCCACCCCCACCTCCTCCAAAGGATGCCAAAGACGGGAA GGATGGAAAAGATGCCAAAACTGGAAAGGATGTCAAAGATCCCGTAACCGGAAAAGATGCAGCATTAGGTGCAACCACGTCAGGAGCAAAGGCAGAGGCT GCTGCACCTGCCAAAGATGCCCCTGCTAACGGTTCCTCCAACTCGCCCAAAGAAGATGCAGCTGCTGACATTGCCCAGCCAACTGCAGAGCCAGAGCCAA CTCCAGCTGCCTAA
AA sequence Show only first row Show all	>Potri.004G040100.2 pacid=42795774 polypeptide=Potri.004G040100.2.p locus=Potri.004G040100 ID=Potri.004G040100.2.v4.1 annot-version=v4.1 MAAFDAFEVIQASSHTSFDGVDDESYSNFASYSTAAGPGDFPGGDVSVDHVSGSPDVFGFGSDADPDFSHQSPFGSVHVENGNGNGYNGADDDVFVSDGP ILPPPTEMEPEEGYALREWRRQNAMHLEEKEMREKEMRKQIIEEADEYIRGFYEKRKLNIETNIATNREREKLYLANQEKFHKEADKQYWKAIAEIIPRE VPNIEKRRGKKEKDQDKKPSVTVIQGPKPGKPTDLSRLRQILVKLKHTPPPHMIPPPPPPKDAKDGKDGKDAKTGKDVKDPVTGKDAALGATTSGAKAEA AAPAKDAPANGSSNSPKEDAAADIAQPTAEPEPTPAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20760			Clathrin light chain protein (...		Potri.004G040100 [exp]	0	1
AT2G20760			Clathrin light chain protein (...		Potri.011G049500 [exp]	1.00	0.9205
AT3G16760			Tetratricopeptide repeat (TPR)...		Potri.010G007000 [exp]	2.82	0.8999
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.002G163200 [exp]	5.29	0.8891	AN.1
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.003G092300 [exp]	8.48	0.8882	UBP20.1
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.006G157000 [exp]	12.00	0.9034
AT2G18840			Integral membrane Yip1 family ...		Potri.018G093800 [exp]	16.49	0.8805
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.006G084000 [exp]	18.00	0.8658	ASP1.2
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.011G125500 [exp]	22.44	0.8506
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	22.47	0.8998
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Potri.010G001900 [exp]	22.60	0.8503	NPSN12.1

Compare expression of checked genes

Potri.004G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.