Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09010 435 / 2e-152 Protein kinase superfamily protein (.1) AT1G16670 355 / 3e-121 Protein kinase superfamily protein (.1) AT1G56145 341 / 1e-108 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 338 / 1e-107 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 335 / 2e-106 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 331 / 8e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 330 / 1e-104 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 330 / 2e-104 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 327 / 3e-103 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 325 / 4e-103 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049600 [exp] 645 / 0 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 435 / 1e-152 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 358 / 2e-121 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 357 / 2e-121 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 354 / 1e-120 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 353 / 4e-120 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 347 / 4e-118 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 352 / 1e-112 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073516 [exp] 331 / 1e-109 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018481 [exp] 560 / 0 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10011193 [exp] 558 / 0 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10001212 [exp] 479 / 6e-166 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10004825 [exp] 434 / 8e-152 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10002494 [exp] 399 / 7e-138 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10042460 [exp] 372 / 5e-128 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 371 / 4e-127 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 349 / 1e-118 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 349 / 3e-118 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10005856 [exp] 340 / 4e-113 AT3G09010 279 / 6e-89 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G040200.3 pacid=42795717 polypeptide=Potri.004G040200.3.p locus=Potri.004G040200 ID=Potri.004G040200.3.v4.1 annot-version=v4.1 ATGAGGTGTAGCTGTTTTGGAGGACCAAGTGTAGATAAAAAAAGAGGGAGTGCTGCCGAGACTCTCCACGGTATAGATGGTGATTTGCTTCAGGATGTTA ACCATATATCTTACAATGAATTAAGATCAGCAACAGATAACTTCCATTCAAGCAATAAGATAGGACGGGGAGGTTTTGGCGATGTTTACAAGGGAACCCT CAGGAGCGGAATACAAGTTGCTGTAAAGACACTTTCCGCTCAATCAAAGCAAGGCGTACGAGAATTTTTGAATGAAATCAAAACGATATCAAACGTTAGG CATCCAAATCTTGTTGAGTTGATAGGGTGCTGTGTTCAAGGAGCAAACCGGATTCTAGTATATGAATATTTAGAGAATAACAGTCTTGATCGTGCTTTGT TAGGTTCAAGGAGTACAAATATTAGACTAGACTGGGGAAGGAGATCTGCTATTTGCTTGGGTATTGCTAGGGGTCTTGCTTTCCTTCATGAAGAACTGGT ACCACATATCGTGCATAGAGACATCAAGGCTAGCAATATACTTCTTGACAAAGACCTCAACCCAAAAATTGGAGACTTTGGGTTGGCTAAACTGTTCCCA GAAAATATCACCCACATTAGCACAAGAATAGCTGGAACAACTGGTTATTTGGCACCAGAATATGCATTGGGTGGTCAGTTAACCATGAAGGCTGATGTGT ACAGCTTTGGGGTTCTTATCCTTGAAATAATTAGTGGCAGAAATAGTACAAAGCCAAGCTGGGGAGGGATGGAGAAGTTACTCCTAGAATGGGCATGGCA GCTTCACGAAGAAGGGAGACCCTTGGAACTCGTGGATCCAGAGATGGGAGAATTTCCCGAGGAAGAAGTCATTAGGTACATTAAAGTTGCCTTTTTCTGC ACCCAATCAGCAGCAAACCGAAGGCCACTCACGAGCCAGGTTGTTGACATGCTTTCTAAGCAAATCCGGCTAAATGACAAGTTACTAACCGCTCCAGGTT TCTTCCGAGATTCAGATAGCGCTAGCGGGGGACCTTCTTCCATGAAAAAATCAACCACCGACTCTACTAGCTACCAGATGAGCTCTGTTCCGGTAACAAT CACCGAGGTGACTCCCAGATGA
AA sequence Show only first row Show all	>Potri.004G040200.3 pacid=42795717 polypeptide=Potri.004G040200.3.p locus=Potri.004G040200 ID=Potri.004G040200.3.v4.1 annot-version=v4.1 MRCSCFGGPSVDKKRGSAAETLHGIDGDLLQDVNHISYNELRSATDNFHSSNKIGRGGFGDVYKGTLRSGIQVAVKTLSAQSKQGVREFLNEIKTISNVR HPNLVELIGCCVQGANRILVYEYLENNSLDRALLGSRSTNIRLDWGRRSAICLGIARGLAFLHEELVPHIVHRDIKASNILLDKDLNPKIGDFGLAKLFP ENITHISTRIAGTTGYLAPEYALGGQLTMKADVYSFGVLILEIISGRNSTKPSWGGMEKLLLEWAWQLHEEGRPLELVDPEMGEFPEEEVIRYIKVAFFC TQSAANRRPLTSQVVDMLSKQIRLNDKLLTAPGFFRDSDSASGGPSSMKKSTTDSTSYQMSSVPVTITEVTPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09010			Protein kinase superfamily pro...		Potri.004G040200 [exp]	0	1
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	7.61	0.8406
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086900 [exp]	10.77	0.8343
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	12.64	0.8379	Pt-CRCK3.2
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	15.29	0.8354
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.002G129100 [exp]	19.74	0.8262
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	22.24	0.8294
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	26.45	0.8218
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.009G151700 [exp]	26.49	0.8221
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	26.83	0.8249
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	27.62	0.8249

Compare expression of checked genes

Potri.004G040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.