Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04920 1813 / 0 AtSFR6, SFR6 sensitive to freezing 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040400 [exp] 2232 / 0 AT4G04920 1764 / 0.0 sensitive to freezing 6 (.1.2) Potri.011G049700 [exp] 2112 / 0 AT4G04920 1790 / 0.0 sensitive to freezing 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011192 [exp] 1991 / 0 AT4G04920 1903 / 0.0 sensitive to freezing 6 (.1.2) Lus10018482 [exp] 851 / 0 AT4G04920 831 / 0.0 sensitive to freezing 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G040300.2 pacid=42795947 polypeptide=Potri.004G040300.2.p locus=Potri.004G040300 ID=Potri.004G040300.2.v4.1 annot-version=v4.1 ATGACTTCTTCTTCTTCTATTAAGGAGACGACGGAGGAGGAACAGGTTGCGCCGGATATTGTGCCGGCTGACGGTGGTGTTGCTGGAGTGGAGAAGACTG AGCCTGTCAGCAGTGGCGGGGAGGAAGAGAGTGGTGGCGAGAAACTTGACGATTCAATGGAAGAGGACTCAGTGAGTCCGGCTACTGTGTTTTGTATTAG GCTGAAGCAGCCACGGTCGAATTTGCAGCATAAAATGAGTGTGCCTGAGCTTTGTCGCAAATATAGTGCTGTTGCTTGGTGTGGTAAGCTGAATGCGATA GCTTGTGCATCAGAAACTTGTGCAAGAATTCCCAGCTCCAATGCAAACCCACCATTTTGGATCCCCATACACGTGGTTATCCCTGAGAGACCAACTGAAT GTGCAGTTTTCAATGTCATAGCAGATTCTCCTCGTGATTCTGTTCAGTTTATCGAATGGTCCCCTACTTCTTGCCCTCGTGCATTATTAATAGCTAATTT CCATGGGAGGATAACTATCTGGACTCAACCTTCTCAAGGTCCATCTAATTTGGTGCGTGATGCTAGCTGCTGGCAGCGTGAGCATGAATGGCGACAGGAC ATTGCAGTTGTTACTAAATGGCTATCTGGGGTCTCTCCATACAGGTGGCTTTCGTCAAAGTCCAGTACTCCCACAAACTCAAAGTCAGCTTTTGAGGAAA AATTCCTTTCTCAGCATTCTCAAACTTCAGCTAGATGGCCAAATTTCCTCTGTGTTTGTTCAGTTTTCTCATCTGGTTCTGTTCAACTTCATTGGTCCCA GTGGCCCCCAAGTCAGAATAATACATCACCGAAGTGGTTTCGCACAAGCAAAGGACTCTTGGGTGCCGGCCCTAGTGGGATTATGGCTGCTGATGCTATT ATAACGGATAGTGGTGCAATGCATGTTGCAGGTGTTCCGATTGTAAACCCTTCAACTGTTGTTGTTTGGGAGGTTACTCCTGGCCCTGGAAATGGATTTC AAGCGACTCCGATGGTGAGTGCTAGCAATGGGGTCCCGCCTTCAGTCAAGCCTCCTAATTGGTCTGGTTTTGCTCCTTTGGCTGCATATTTATTCAGCTG GCAGGAGCATCTGATGTCTGAAGCAATGCAAGGGAAAAAGCATATGGATAAAGATTTCGCTGACACTGTCTCACTTCATTGTTCGCCAGTTTCAAATTTT TCTGCGTATGTGAGTCCTGAGGCTGCAGCTCAATCTGCAGCAACTACCACTTGGGGTTCTGGAGTCAGTGCCGTTGCTTTTGATCCGACTCGTGGTGGCT CTGTGATTGCGGTTGTTATAGTTGAGGGACAATATATGTCCCCTTATGATCCAGATGAGGGTCCTTTAATCACGGGATGGAGGGTGCAACGCTGGGAATC ATCCCTTCAACCTGTCGTTCTTCATCCAATATTTGGAAATCCCACTTCTGGTTTTGGTGGGCAGGCACCCATGCAAACTGTATGGGTGTCCAAAGTGGAT ACAAGCATACCACCAACTAATGATTTTAAAAATCTCCAAGCAGCTCCTGCAGTACCAATCTCAGATGCAAGAAAGGCATCTGATTCTGGTTCTGAGAAGA CGAAAAGAGTCACCTTTGATCCCTCTGATCTGCCCAGCGATGTGAGAACTCTTGCTCGAATTGTTTATTCTGCTCATGGCGGCGAGATTGCTATTGCTTT TCTGCGGGGTGGAGTTCACATTTTCTCTGGGCCAAACTTCACAGTTGTTGACAACTACCAGATTAATGTTGGATCTGCAATTGCTGCTCCTGCCTTCTCT TCCACAAGCTGCTGCTCAGCTTCAGTTTGGCATGACACTAGCAAGGATCGCACTGTATTAAAGATAATTCGTGTTCTTCCTCCTGCTGTTCCAAGTAGTC AGGTGAAGGCTAACTCAGCAATCTGGGAGCGTGCTATTGCTGAAAGGTTTTGGTGGAGCCTTTTGGTTGGTGTTGATTGGTGGGATGCTGTTGGGTGTAC ACAGAGTGCTGCTGAGGATGGCATCGTTTCACTTAACAGTGTCATTGCAGTCTTGGATGCTGATTTTCATTCTCTTCCCTCTACACAGCACAGGCAGCAG TATGGTCCTAGTCTGGACAGGATAAAATGTAGGCTACTGGAAGGTACAAATGCTCAGGAGGTTAGGGCAATGGTTCTTGACATGCAAGCTAGGTTGCTGC TTGATATGCTCGGCAAAGGCATTGAGTCAGCTTTGATAAATCCTTCAGCATTAGTACCTGAACCATGGCAGGCTTCTGGCGAGACATTATCTGGCATTGA TCCTGAAGCAATGACTGTTGAACCAAACCTTGTTCCGAGTATTCAGGCTTATGTTGATGCAGTTCTTGATCTAGCTTCACATTTTATCACACGTCTACGG CGTTATGCAAGTTTCTGTCGCACACTGGCCAGTCACGCCGTTACAGCAGGCGCAGGCAGTAACCGCAATACGGTGACTAGTCCTACTCAAAGTTCGGCAT CGCCCACACCAAATCAGGGTGGTCAAAGTGGCGGTACAAGTTCTACTGGAAGCACTCAGATGCAAGCTTGGGTACAAGGTGCCATTGCTAAGATTAGTAG CACAACTGATGGAGTGTCCACTGCAACTTCAAACCCCATAAGTGGTCCATCTTCTTTCATGCCAATAAGCATCAATACTGGAACTTTTCCTGGAACCCCA GCAGTGAGGCTCATCGGTGACTGCCATTTCCTTCACAGATTATGCCAGCTTCTGCTTTTCTGTTTTTTCTTTCGGCGGCGAACTCAAGTACCTCGCTTTG CCGGAGGTACACAGAGAAATCCCACTGATACAAATGCGCAAAAACTTCAGTCTGGTGCTCCTGGCAAGGTGGAGGAGATCAACTCTGTTTCTTCAAAGCC AGCACCAGCTGCGGTTCGGTCGGATGAAGGTCAGGCAGTTCGAGGTAGTCAGGTAGTGCCTGGAGCTAAAGCAGTCGAAGAGGGACCTGCTGGCAGGCAC AGAGTAGGCAGTGGCAATGCTGGCCAAGGATACAGTTCTGAGGAGGTGAAGGTCCTTTTCCTCATACTCATGGATCTGTGTCGGCGAACAGCAGCTCTGG TACACCCATTGCCGGTTTCTCAAGTAGGAAGCAGCAATATCCAGGTGCGGTTGCATTATATTGACGGCAATTATACTGTATTGCCAGAGGTTGTAGAAGC ATCTCTTGGCCCGCATATGCAGAACATGCCACGGCCCAGAGGTGCAGATGCTGCTGGTCTGTTACTCCGAGAGTTAGAACTACACCCACCGTCTGAAGAG TGGCACAGGCGGAATATGTTTGGCGGACCCTGGTCTGATCCAGAGGATATTGGTTCAGAGGATACTTCTAAGCTTAACTCCACAAATTCACTTGATTTTA GCTCACTGGAAAATTGTGATGTTTATTACGGAGCTCATGGCCTTTGGCCGAGGAAGCGCAGACTGTCTGAAAGAGATGCAGCTGTTGGCTTGAACACCTC TGCTGGCCTGGGAGCATATCTTGGCATAATGGGTTCTCGAAGAGATGTTGTTACTGCAGTGTGGAAGACTGGTCTTGAAGGCGTTTGGTACAAGTGCATA AGATGTTTGCGGCAGACTTCAGCTTTGGCCTCCCCTGGTGCTGCAAATCCACCAGATCAAAATGAAAGAGAGGCTTGGTGGATCAGCCGTTGGGCCTATG GCTGTCCGATGTGTGGGGGGACATGGGTTCGAGTTGTATAG
AA sequence Show only first row Show all	>Potri.004G040300.2 pacid=42795947 polypeptide=Potri.004G040300.2.p locus=Potri.004G040300 ID=Potri.004G040300.2.v4.1 annot-version=v4.1 MTSSSSIKETTEEEQVAPDIVPADGGVAGVEKTEPVSSGGEEESGGEKLDDSMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRKYSAVAWCGKLNAI ACASETCARIPSSNANPPFWIPIHVVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPSNLVRDASCWQREHEWRQD IAVVTKWLSGVSPYRWLSSKSSTPTNSKSAFEEKFLSQHSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQNNTSPKWFRTSKGLLGAGPSGIMAADAI ITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMVSASNGVPPSVKPPNWSGFAPLAAYLFSWQEHLMSEAMQGKKHMDKDFADTVSLHCSPVSNF SAYVSPEAAAQSAATTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSLQPVVLHPIFGNPTSGFGGQAPMQTVWVSKVD TSIPPTNDFKNLQAAPAVPISDARKASDSGSEKTKRVTFDPSDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTVVDNYQINVGSAIAAPAFS STSCCSASVWHDTSKDRTVLKIIRVLPPAVPSSQVKANSAIWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQQ YGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMTVEPNLVPSIQAYVDAVLDLASHFITRLR RYASFCRTLASHAVTAGAGSNRNTVTSPTQSSASPTPNQGGQSGGTSSTGSTQMQAWVQGAIAKISSTTDGVSTATSNPISGPSSFMPISINTGTFPGTP AVRLIGDCHFLHRLCQLLLFCFFFRRRTQVPRFAGGTQRNPTDTNAQKLQSGAPGKVEEINSVSSKPAPAAVRSDEGQAVRGSQVVPGAKAVEEGPAGRH RVGSGNAGQGYSSEEVKVLFLILMDLCRRTAALVHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEE WHRRNMFGGPWSDPEDIGSEDTSKLNSTNSLDFSSLENCDVYYGAHGLWPRKRRLSERDAAVGLNTSAGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCI RCLRQTSALASPGAANPPDQNEREAWWISRWAYGCPMCGGTWVRVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040300 [exp]	0	1
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	1.41	0.8962
					Potri.013G071800 [exp]	5.65	0.8637
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	7.87	0.8647	Pt-CRP.3
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	8.12	0.8475
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.005G114300 [exp]	8.48	0.8647
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.003G196900 [exp]	9.48	0.8345
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	9.53	0.8400
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	11.22	0.8558
AT3G45830			unknown protein		Potri.009G026100 [exp]	13.03	0.8582
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	14.73	0.8541

Compare expression of checked genes

Potri.004G040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.