Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04920 1765 / 0 AtSFR6, SFR6 sensitive to freezing 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040300 [exp] 2224 / 0 AT4G04920 1813 / 0.0 sensitive to freezing 6 (.1.2) Potri.011G049700 [exp] 2075 / 0 AT4G04920 1790 / 0.0 sensitive to freezing 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011192 [exp] 1937 / 0 AT4G04920 1903 / 0.0 sensitive to freezing 6 (.1.2) Lus10018482 [exp] 836 / 0 AT4G04920 831 / 0.0 sensitive to freezing 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G040400.2 pacid=42794808 polypeptide=Potri.004G040400.2.p locus=Potri.004G040400 ID=Potri.004G040400.2.v4.1 annot-version=v4.1 ATGACTTCTTCTTCTTCTATTAAGGAGACGACGGAGGAGGAGCAGGTTACGCCGGATATTTTACCGGCTGACGGTGGTGTTGGTGGAGTGGAGAAGATTG AGCCTGTCAGTAGTGGGGGGGAGGAAGAGAGTGGTGGTGAGAAACTTGACGATTCAATGGAAGAGGACTCAGTGAGTCCGGCTACTGTGTTTTGTATTAG GCTGAAACAGCCACGGTCGAATTTGCAGCATAAAATGAGTGTGCCTGAGCTTTGTCGCAAATTTAGTGCTGTTGCTTGGTGTGGTAAGCTGAACGCGATA GCTTGTGCATCAGAAACTTGTGCAAGAATTCCCAGCTCCAATGCAAACCCCCCATTTTGGATCCCCATACACTTGGTTATCCCTGAGAGACCAACTGAAT GTGCAGTTTTCAATGTCATAGCAGATTCTCCTCGTGATTCTGTTCAGTTTATCGAATGGTCCCCTACTTCTTGCCCTCGTGCATTATTAATAGCTAATTT CCATGGGAGGATAACTATCTGGACTCAGCCTTCTCAATGTCCATCTAATTTGGTGCGTGATGCTAGCTGCTGGCAGCGTGAGCATGAATGGCGACAGGAC ATTGCAGTTGTTACTAAATGGCTATCTGGGGTCTCTCCATACAGGTGGCTTTCGTCAAAGTCCAGTACTCCCACAAACTCAAAGTCAGCTTTTGAGGAAA AATTCCTTTCTCAGCATTCTCAAACTTCAGCTAGATGGCCAAATTTCCTCTGTGTTTGTTCAGTTTTCTCATCGGGCTGTGTTCAACTTCATTGGTCCCA GTGGCCCCCTAGCCAGAATAATACATCACCGAAGTGGTTTTGCACGAGCAAAGGACTCTTGGGTGCCGGCCCTAGTGGGATTATGGCTGCTGATGCTATT ATAACAGATAGTGGTGCAATGCATGTTGCAGGTGTTCCGATTGTAAACCCTTCAACTGTTGTTGTTTGGGAGGTTACTCCTGGCCCTGGAAATGGATTTC AAGCGACCCCAATGGCGAGTGCTAGCAATGGGGTCCCGCCTTCAGTCAAGCCTCCTAATTGGTCTGGTTTTGCTCCTTTGGCTGCATATTTATTCAGCTG GCAGGAGCATCTGATGTCTGAAGCAATGCCAGGGAAAAAGCATATGGATAAAGATTTCACTGACACTGTCTCACTTCATTGTTCGCCAGTTTCAAATTTT TCTGCGTATGTGAGTCCGGAGGCTGCAGCTCAATCTGCAGCAACTACCACTTGGGGTTCTGGAGTCAGTGCCGTTGCTTTTGATCCGACTCGTGGTGGCT CTGTGATTGCGGTTGTTATAGTTGAGGGACAATATATGTCCCCTTATGATCCAGATGAGGGTCCTTTAATCACGGGATGGAGGGTGCAACGATGGGAATC GTCCCTTCAACCTGTCGTACTTCATCCAATATTTGGAAATCCCACTTCTGGTTTTTGTGGGCAGGCACCCATGCAAACTGTATGGGTGTCCAAAGTGGAT ACAAGCATACCACCAACTAATGATTTTAAAAATCTCCAAGCAGCTCCTGCAGTACCAATCTCAGATGGAAGAAAGGCATCTGATTCTCGTTCTGAGAAGA CGAAAAGAGTCACCTTTGATCCCTCTGATCTGCCCAGCGATGTTAGAACTCTTGCTCGAATTGTTTATTCTGCTCATGGTGGCGAGATTGCTATTGCTTT TCTGCGGGGTGGAGTTCACATTTTCTCTGGGCCAAACTTCACACTTGTTGACAACTACCAGATTAATGTTGGATCTGCAATTGCTGCTCCTGCCTTCTCT TCCACAAGCTGCAGCTCAGCTTCAGTTTGGCATGACACTAGGAAGGATCGCAGTATATTGAAGATAATTCGTGTTCTTCCTCCTGCTGGTCCAATTAGTC AGGTGAAGGCTAACTCAGCAATCTGGGAGCGTGCTATTGCTGAAAGGTTTTGGTGGAGCCTTTTGGTTGGTGTTGATTGGTGGGATGCTGTTGGGTGTAC ACAGAGTGCTGCTGAGGATGGCATCGTTTCACTTAACAGTGTCATTGCAGTCTTGGATGCTGATTTTCATTCTCTTCCCTCTACACAGCACAGGCAGCTG TATGGTCCTAGTCTGGACAGGATAAAATGTAGGCTATTGGAAGGTACAAATGCTCAGGAGGTTAGGGCAATGGTTCTTGACATGCAAGCTAGGTTGCTGC TTGATATGCTCGGCAAAGGCATTGAGTCAGCTTTGATAAATCCTTCAGCATTAGTACTTGAACCATGGCAGGCTTCTGGCGAGACATTATCTGGCATTGA TCCTGAAGCAATGACTGTTGAGCCAAACCTTGTTCCGAATATTCAGGCTTATGTTGATGCAGTTCTTGATCTAGCTTCACATTTTATCACACGTCTACGG CGTTATGCAAGTTTCTGTCGCACACTGGCCAGTCACGCCGTTACAGCAGGCGCAGGCAGTAACCGCAATACGGTGACTAGTCCTACTCAAAGTTCGGCAT CTCCCGCACCAAATCAGGGTGGTCAAAGTGGCGGTACAAGTTCTACTGGAAGCACTCAGATGCAAGCTTGGGTACAAGGTGCCATTGCTAAGATTAGTAG CACAACAGATGGAGTGTCCACTGCAACACCAAACCCCATAAGTGGTCCATCTTCTTTCATGCCAATAAGCATCAATACTGGAACTTTTCCTGGAACCCCA GCAGTGAGGCTCATCGGTGACTGCCATTTCCTTCACAGATTATGCCAGCTTCTGCTTTTCTGTTTTTTCTTTCGGCGAACTCAACTACCTCGCTTTGCCG GAGGTACACAGAGAAATCCCACTGATACAAATGCGCAAAAACCTCAGTCTGGTGCTGCTGGCAAGGTGGAGGAGATCAACACTGTTTCTTCAAAGCCAGC ACCAGCTGTAGTTAGGTCGGATGAAGGGCAGGCAGTTCGAGGTAGTCAGGTAGTGCCTGGAGCTAAAGCAGTCGAAGAGGGACCTGCAGGCAGGCACAGG GTAGGCAATGGAAATGCTGGCCAAGGATACAGTTTTGAGGAGGTGACGGTCCTTTTCCTCATACTCATGGATCTGTGTCGGCGAACAGCATCTCTGGGAC ACCCATTGCCGGTTTCTCAAGTAGGAAGCAGCAATATCCAGGTGCGGTTGCATTATATTGACGGCAATTATACTGTATTGCCAGAGGTTGTAGAAGCATC TCTTGGTCCGCATATGCAGAACATGCCACGGCCCAGAGGTGCAGATGCTGCTGGTCTGTTACTCCGAGAGTTAGAACTACACCCTCCATCTGAAGAGTGG CACAGGCGGAATATGTTTGGCGGACCCTGGTCTGATCCAGAGGATATGGGTTCAGACGATACTTCTAAGCTTAACTCCACAAATTCACTTGATTTTAGCT CACTGGAAAATTGTGATGTTTATTACGGAGCTCATGGCCTTTGGCCGAGGAAGCGCAGACTGTCTGAAAGAGATGCAGCTGTTGGCTTGAACACCTCTGC AGGCCTGGGAGCATATCTTGGCATAATGGGTTCTCGAAGAGATGTTGTTACTGCAGTGTGGAAGACTGGTCTTGAAGGCGTTTGGTACAAGTGCATAAGA TGTTTGCGGCAGACTTCGGCTTTGGCCTCCCCTGGTGCTGCAAATCCACCAGATCAAAATGAAAGAGAGGCTTGGTGGATCAGCCGTTGGGCCTATGGCT GTCCGATGTGTGGGGGGACATGGGTTCGAGTTGTATAG
AA sequence Show only first row Show all	>Potri.004G040400.2 pacid=42794808 polypeptide=Potri.004G040400.2.p locus=Potri.004G040400 ID=Potri.004G040400.2.v4.1 annot-version=v4.1 MTSSSSIKETTEEEQVTPDILPADGGVGGVEKIEPVSSGGEEESGGEKLDDSMEEDSVSPATVFCIRLKQPRSNLQHKMSVPELCRKFSAVAWCGKLNAI ACASETCARIPSSNANPPFWIPIHLVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQCPSNLVRDASCWQREHEWRQD IAVVTKWLSGVSPYRWLSSKSSTPTNSKSAFEEKFLSQHSQTSARWPNFLCVCSVFSSGCVQLHWSQWPPSQNNTSPKWFCTSKGLLGAGPSGIMAADAI ITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMASASNGVPPSVKPPNWSGFAPLAAYLFSWQEHLMSEAMPGKKHMDKDFTDTVSLHCSPVSNF SAYVSPEAAAQSAATTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSLQPVVLHPIFGNPTSGFCGQAPMQTVWVSKVD TSIPPTNDFKNLQAAPAVPISDGRKASDSRSEKTKRVTFDPSDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTLVDNYQINVGSAIAAPAFS STSCSSASVWHDTRKDRSILKIIRVLPPAGPISQVKANSAIWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQL YGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVLEPWQASGETLSGIDPEAMTVEPNLVPNIQAYVDAVLDLASHFITRLR RYASFCRTLASHAVTAGAGSNRNTVTSPTQSSASPAPNQGGQSGGTSSTGSTQMQAWVQGAIAKISSTTDGVSTATPNPISGPSSFMPISINTGTFPGTP AVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFAGGTQRNPTDTNAQKPQSGAAGKVEEINTVSSKPAPAVVRSDEGQAVRGSQVVPGAKAVEEGPAGRHR VGNGNAGQGYSFEEVTVLFLILMDLCRRTASLGHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEW HRRNMFGGPWSDPEDMGSDDTSKLNSTNSLDFSSLENCDVYYGAHGLWPRKRRLSERDAAVGLNTSAGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIR CLRQTSALASPGAANPPDQNEREAWWISRWAYGCPMCGGTWVRVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.004G040400 [exp]	0	1
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Potri.005G260100 [exp]	2.44	0.8252
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.002G081600 [exp]	6.92	0.7996	UBP26.1
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	11.83	0.8040
AT2G01460			P-loop containing nucleoside t...		Potri.008G130200 [exp]	12.32	0.8062
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	13.07	0.8229
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.008G079300 [exp]	13.85	0.7629
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	14.49	0.8134
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Potri.008G078200 [exp]	15.09	0.6650
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	15.09	0.7901
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	15.16	0.8192

Compare expression of checked genes

Potri.004G040400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.