Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47960 578 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018483 [exp] 659 / 0 AT2G47960 585 / 0.0 unknown protein Lus10011192 [exp] 640 / 0 AT4G04920 1903 / 0.0 sensitive to freezing 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06159 [poplar] [flax] DUF974 Protein of unknown function (DUF974)
Representative CDS sequence Show only first row Show all	>Potri.004G040500.1 pacid=42793998 polypeptide=Potri.004G040500.1.p locus=Potri.004G040500 ID=Potri.004G040500.1.v4.1 annot-version=v4.1 ATGAGCACGGCACCAGCTACCCAATCACTAGCCTTCCGTGTAATGCGACTATGCCGTCCATCTTTCCACGTCGACACTCCTCTCCTTCTGGACCCCTCCG ATCTCATTCTTGGTGAAGACATCTTCGACGATCCTCTCGCCGCCACTCACCTCCCTCCACTCATCGACACCCACCTCACCAATCCGATCGACTCCTCCGA TCTAAGTTACCGCTCTCGATTCCTCCTCCAAAACCCCTCCGATTCCTTCGGTCTCTCTGGCCTCCTCGTCCTCCCTCAATCCTTCGGGGCGATTTATTTG GGAGAGACGTTTTGCAGTTACGTTAGCATTAATAACAGTTCTAATTTTGAAGTTAGAGATATTGTTATTAAGGCTGAAATGCAAACGGAGAGACAAAGGA TTTTACTGCTAGATACCTCAAAAACACCTGTTGAATCAATTCGAGCTAGTGGCCGTTACGATTTTATTGTTGAACATGATGTGAAAGAACTCGGAGCTCA TACGTTGGTTTGTACTGCTTTGTATACTGATGGTGATGGTGAAAGGAAATATCTGCCGCAGTTTTTCAAGTTTATTGTTGCAAATCCGCTTTCGGTTAGG ACTAAGGTCCGTGTAGTCAAGGAAACTACATATTTAGAGGCATGCATTGAGAATCACACAAAAACAAACCTTTACATGGACCAAGTTGAGTTTGAGCCAG CTCCAAATTGGAGTGCAAAAATTCTAAAAGCTGATGAACACAAATCTAAGGATAATTCTCCATCCAGGGAAATATTCAAGCCACCTGTCCTTGTTAAATC TGGTGGAGGAATTCGCAACTATCTTTACCAACTGTCATTGTCCTCACATGGTTCAGCAGAGAGTAATGTTCTTGGTAAGCTTCAGATAACATGGCGCACA AATTTAGGTGAACCTGGTCGCCTACAGACACAGCAAATACTTGGCACTCCCATCACGCCTAAGGAGATAGAGTTACATGTTGCTGAGGTTCCATCTGCCA TCAACTTGGATAGACCATTTTTGGTACACTTGAATCTCACAAACCAGACGGATAGAGAATTGGGCCCTTTTGAAGTTTGGTTGTCACAAGATGATACTCT CGATGAGAAAACTGTTATGATTAATGGTCTCCAAACAATGGAATTATCCCAGTTGGAAGCATTTGGTAGCACAGATTTTTACTTGAACCTCATTGCTACT AAGCTTGGAGTCCAGAAAATAACAGGCATTACAGTATTTGACAAATCAGAGAAGAAAACTTATGCCCCATTGCCTGATTTAGAGATATTCGTGGACATGC ATTGA
AA sequence Show only first row Show all	>Potri.004G040500.1 pacid=42793998 polypeptide=Potri.004G040500.1.p locus=Potri.004G040500 ID=Potri.004G040500.1.v4.1 annot-version=v4.1 MSTAPATQSLAFRVMRLCRPSFHVDTPLLLDPSDLILGEDIFDDPLAATHLPPLIDTHLTNPIDSSDLSYRSRFLLQNPSDSFGLSGLLVLPQSFGAIYL GETFCSYVSINNSSNFEVRDIVIKAEMQTERQRILLLDTSKTPVESIRASGRYDFIVEHDVKELGAHTLVCTALYTDGDGERKYLPQFFKFIVANPLSVR TKVRVVKETTYLEACIENHTKTNLYMDQVEFEPAPNWSAKILKADEHKSKDNSPSREIFKPPVLVKSGGGIRNYLYQLSLSSHGSAESNVLGKLQITWRT NLGEPGRLQTQQILGTPITPKEIELHVAEVPSAINLDRPFLVHLNLTNQTDRELGPFEVWLSQDDTLDEKTVMINGLQTMELSQLEAFGSTDFYLNLIAT KLGVQKITGITVFDKSEKKTYAPLPDLEIFVDMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47960			unknown protein		Potri.004G040500 [exp]	0	1
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	3.16	0.6956
AT5G56350			Pyruvate kinase family protein...		Potri.003G223100 [exp]	3.87	0.6903
AT5G17250			Alkaline-phosphatase-like fami...		Potri.003G059300 [exp]	4.47	0.6935
AT4G39690			unknown protein		Potri.005G080200 [exp]	5.19	0.6630
AT1G04900			Protein of unknown function (D...		Potri.001G314700 [exp]	11.66	0.6654
AT4G12340			copper ion binding (.1)		Potri.003G114200 [exp]	14.49	0.5853
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	18.33	0.6603	CEF.1
AT1G52320			unknown protein		Potri.003G054800 [exp]	23.55	0.6271
AT3G08950		HCC1	homologue of the copper chaper...		Potri.016G118700 [exp]	29.93	0.6819
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G188600 [exp]	32.86	0.6370	AHA6.4

Compare expression of checked genes

Potri.004G040500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.