Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53750 295 / 4e-97 CBS domain-containing protein (.1) AT4G27460 286 / 8e-94 Cystathionine beta-synthase (CBS) family protein (.1) AT1G65320 97 / 5e-22 Cystathionine beta-synthase (CBS) family protein (.1) AT1G80090 43 / 0.0002 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050500 [exp] 622 / 0 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) Potri.001G402900 [exp] 381 / 9e-131 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.011G122000 [exp] 365 / 4e-124 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.019G052650 [exp] 104 / 1e-24 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G087100 [exp] 103 / 3e-24 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018183 [exp] 475 / 7e-168 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10025651 [exp] 473 / 7e-167 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10029665 [exp] 434 / 6e-152 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10042702 [exp] 428 / 3e-149 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10011457 [exp] 107 / 1e-25 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1) Lus10037535 [exp] 105 / 5e-25 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G041000.1 pacid=42794633 polypeptide=Potri.004G041000.1.p locus=Potri.004G041000 ID=Potri.004G041000.1.v4.1 annot-version=v4.1 ATGGCAGCAAGTATTTTATCTCATGAGGTGTCGGACCTATGTCTTGGAAAACCTGCGCTGAGCTCTCTGTCTGTTTCTGCAACCGTCGGGGAAGCGTTGT CTGCTCTTAAGAGATTTGGTGATTTGTTTTTAAGCGTTTGGAGCTGTGATCAACATCACCGTTGTAACTCTCCAAGATCGATCAAGGTTGACTTTGCAGA ATGTAAATGCATTGGCAAAGTTTGCTTGGCAGATGTGATTTGCTTCCTGTCTAAAGAAGAGAATTTGAAGAATCCAGGGAAAGCCTTGCAGGAGCCGGTG TCCCTGCTTCTAAATTCTAAGGTTTCTGGACTTGTTAGGCACCTGGAACCTCACGCCAGCTTACTGGAGGCTATAGATCTCATCCTTGAAGGTGCACAGA ACCTTGTGATACCACTTCACAACCCCTTCACAAGAAAGAAGCTGATAAGCAAATCCACTGCCAATTCCACCCTTCACAACAACCGTGAGTACTGCTGGCT CACTCAGGAAGACATAGTCCGTTACCTCCTCAACTCCATTGGCCTCTTCTCTCCAACTCCAAACCACACCATCGAGTCCCTCAACATCATTGATACTGAA TCCTTCTTTACCGTCCATTACGATGACCCTGCTGCATTGCCCTTGATTTCTCAATCCCTCGTTAAACAAACATCTGTAGCAATTCTTGATGCAGACGGCA AGTTGATTGGCGAAATCTCACCATTCACATTGAACTTCTGTGACGAGACAGTGGCTGCTGCAATTGCGACACTTTCAGCCGGGGAGTTGATGGCTTACAT AGAATGTGGTGACCCGCCGGAGGACCTGATAATGTTGGTGAAGGAAAGACTGGAAGAGAGGAATCTAGGACCTGCGTTGGACTTAATAGAAGAGGAATCA GGAATTTTATCATCTTCATCTGATTCATCCTATTCATCTTCATCAGACGAAGAGTTCGGAATGGTAAGGAGTGGGAGGATAGCTGGGAATTCAGCAAGAG TGGGGAGGAGCACCGAGACAATTGTGTGCTATCCATGGAGCTCATTGGTAGCAGTGATGATTCAAGCCCTTTCACATCGTTCAAGCTACACATGGGTTAT TGAAGAGGATGGCACTTTGGTTGGTGGTGTTACCTTCGCAGGAATGATTAAAGTTTTGCGGGAACGTTTGAGGTCAATGGTGTGA
AA sequence Show only first row Show all	>Potri.004G041000.1 pacid=42794633 polypeptide=Potri.004G041000.1.p locus=Potri.004G041000 ID=Potri.004G041000.1.v4.1 annot-version=v4.1 MAASILSHEVSDLCLGKPALSSLSVSATVGEALSALKRFGDLFLSVWSCDQHHRCNSPRSIKVDFAECKCIGKVCLADVICFLSKEENLKNPGKALQEPV SLLLNSKVSGLVRHLEPHASLLEAIDLILEGAQNLVIPLHNPFTRKKLISKSTANSTLHNNREYCWLTQEDIVRYLLNSIGLFSPTPNHTIESLNIIDTE SFFTVHYDDPAALPLISQSLVKQTSVAILDADGKLIGEISPFTLNFCDETVAAAIATLSAGELMAYIECGDPPEDLIMLVKERLEERNLGPALDLIEEES GILSSSSDSSYSSSSDEEFGMVRSGRIAGNSARVGRSTETIVCYPWSSLVAVMIQALSHRSSYTWVIEEDGTLVGGVTFAGMIKVLRERLRSMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53750			CBS domain-containing protein ...		Potri.004G041000 [exp]	0	1
AT3G43540			Protein of unknown function (D...		Potri.006G217700 [exp]	2.00	0.8758
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.006G043092 [exp]	6.63	0.8438
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.004G124800 [exp]	10.81	0.8846
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102700 [exp]	40.69	0.7922
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G016733 [exp]	45.97	0.7987
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Potri.014G040600 [exp]	56.86	0.8387
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073100 [exp]	89.72	0.8175
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012900 [exp]	100.22	0.8246
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.004G199600 [exp]	102.87	0.8070	Pt-NIT2.2
AT2G15960			unknown protein		Potri.004G148200 [exp]	106.49	0.8241

Compare expression of checked genes

Potri.004G041000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.