Plant FIBer expression Database

Potri.004G041600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17020 758 / 0 transcription factor-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012849
[exp]
717 / 0 AT4G17020 711 / 0.0 transcription factor-related (.1.2.3)
Lus10005856
[exp]
280 / 9e-89 AT3G09010 279 / 6e-89 Protein kinase superfamily protein (.1)
Lus10001212
[exp]
246 / 2e-74 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1)
Lus10002564
[exp]
179 / 4e-55 AT4G17020 174 / 5e-54 transcription factor-related (.1.2.3)
Lus10041753
[exp]
134 / 4e-38 AT4G17020 129 / 1e-36 transcription factor-related (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03849 Tfb2 Transcription factor Tfb2
Representative CDS sequence
>Potri.004G041600.1 pacid=42794095 polypeptide=Potri.004G041600.1.p locus=Potri.004G041600 ID=Potri.004G041600.1.v4.1 annot-version=v4.1
ATGCCTCAAGTGAGAATCATTGCAAAGAATTTCATGGACATGGTAGCTTCCTTACCAGCCATGAAACTCGACACGCTCTATCAAAACGCATTCATCTGCG
AAGCCATACTCAGGTCATTGCCGCCTTTAGCGAAGAAATATGTAGTACAAATTTTGTTTTTTGACGGCCCAGTATCAGGTAAATTGCTGGAGCAATGGGT
GCTTGCTGATGGGGTCACCAAACATAGAGTTGCTATTGATCGGTTGATTCAGTTGAGAATTTTTATTGAAGTTTCTGACAAGAAAAGGGAGAGTAGTTAT
AAATTAAACCAGACGTTTCAGGCTAATCTACGAAAGCATTTAACAAATGGTGGAGTTTTGCCAAGGGAAACAATGGCTGCAGTTGTAAAACTCCCTAGCT
TGGAGGAATTAGATACCTACGCGCTTGAACAATGGGAGTGTTTTTTGCTACTTCTTATAAGCTCTGGCCAAGCAGAAAAGCCAACTAGCTTGAGCTCTTC
CATGATGAAAATTTTTCAGCGGGGTCTTTTGTCTCAGAGGGATAGAGATGCTCCAAGATTAACTGAGGGTGGTTTTCAGTTTTTGCTGATGGATACAAAT
GCACAGCTGTGGTACATCATCAGAGAATATATCACTAATTCTGAGGAGAGAGGTACAGAGCCTGCGGATCTGATTTCTTTTCTTCTGGAGCTTAGCTTTC
ATGTCACTGGCGAGGCATATAATATGAATACATTGACTGAGATTCAGAGAAATACTATCAAGGACCTTGCAGAATTGGGATTGGTTAAACTCCAGCAGGG
AAGGAAAGAGAGTTGGTTTATACCTACTAAATTGGCTACGAATCTTTCAGTGAGCTTAACAGATTCATCATCACGGAAACAGGGATATGTTGTTGTAGAA
ACCAACTTTAGATTGTACGCGTACTCATCATCAAAGCTTCATTGTGAAATTCTACGTCTTTTCTCAAAGATAGAATATCAACTTCCAAACCTTATAGTTG
GAGCAATAACAAAAGAAAGTTTGTATACAGCTTTTGAAAATGGCATCACATCTGACCAAATAATTTCTTTTCTTCAGCAGAATGCTCATCCTCGTGTGGC
AGAGAGATTACCATCAGTTCCTGAAAATGTCACTGATCAGATTAGATTGTGGGAAGCAGATCTGAACAGGGTTGAGATAACCCCCTCGCATTTCTATGAT
GAGTTTCCATCCAGGGATACATTTGAGGCTGCTTGTGACTTTGCACGGGAGTGGAATGGTTTGCTGTGGGAGGATTCAAAGAAAATGCGGGTTGTAGTGA
AGGCAGAAATTCACATGAACATGCGAGAGTTTCTTCGTGGTCAAAAGTAG
AA sequence
>Potri.004G041600.1 pacid=42794095 polypeptide=Potri.004G041600.1.p locus=Potri.004G041600 ID=Potri.004G041600.1.v4.1 annot-version=v4.1
MPQVRIIAKNFMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFFDGPVSGKLLEQWVLADGVTKHRVAIDRLIQLRIFIEVSDKKRESSY
KLNQTFQANLRKHLTNGGVLPRETMAAVVKLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLSQRDRDAPRLTEGGFQFLLMDTN
AQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGEAYNMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYVVVE
TNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISFLQQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYD
EFPSRDTFEAACDFAREWNGLLWEDSKKMRVVVKAEIHMNMREFLRGQK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17020 transcription factor-related (... Potri.004G041600
[exp]
0 1
AT4G18490 unknown protein Potri.011G063500
[exp]
3.46 0.9670
Potri.004G095550
[exp]
3.87 0.9680
AT2G47430 CKI1 CYTOKININ-INDEPENDENT 1, Signa... Potri.013G009700
[exp]
4.58 0.9624
AT3G20750 GATA GATA29 GATA transcription factor 29 (... Potri.003G213300
[exp]
7.21 0.9473
AT2G29500 HSP20-like chaperones superfam... Potri.009G148000
[exp]
11.61 0.9584
AT5G02920 F-box/RNI-like superfamily pro... Potri.017G146500
[exp]
11.74 0.9335
AT2G29500 HSP20-like chaperones superfam... Potri.004G187202
[exp]
14.07 0.9560
AT5G28540 BIP1 heat shock protein 70 (Hsp 70)... Potri.013G018000
[exp]
14.24 0.9546 HSP70.11
AT2G01480 O-fucosyltransferase family pr... Potri.010G111500
[exp]
14.28 0.8996
AT5G49010 EMB2812, SLD5 SYNTHETIC LETHALITY WITH DPB11... Potri.010G147050
[exp]
14.38 0.9524

Potri.004G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.