Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04955 669 / 0 ATALN allantoinase (.1) AT5G12200 58 / 1e-08 PYD2 pyrimidine 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067700 [exp] 69 / 2e-12 AT5G12200 863 / 0.0 pyrimidine 2 (.1) Potri.001G273400 [exp] 65 / 7e-11 AT5G12200 857 / 0.0 pyrimidine 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025648 [exp] 684 / 0 AT4G04955 716 / 0.0 allantoinase (.1) Lus10018186 [exp] 630 / 0 AT4G04955 648 / 0.0 allantoinase (.1) Lus10026817 [exp] 66 / 4e-11 AT5G12200 882 / 0.0 pyrimidine 2 (.1) Lus10036064 [exp] 51 / 1e-06 AT5G12200 776 / 0.0 pyrimidine 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [poplar] [flax] Amidohydrolase PF01979 [poplar] [flax] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Potri.004G041800.1 pacid=42796213 polypeptide=Potri.004G041800.1.p locus=Potri.004G041800 ID=Potri.004G041800.1.v4.1 annot-version=v4.1 ATGGACTATCTTCAATTGCGAGTCTTACCTCTACTAGCACTGCTCGCTTCTCTTATCTACTTCTTCTACTTTCAGGATTCTCCCACGCTCTTTGAAAGAA GTGATTGTAGCCTCTTTCCTTATAATCATTACTGGATTATTAGTAAGCGTATTGTGACACCTCATGGAGTTATTTCTGGTGCAGTGGAGGTAAAGGAAGA GAAAATCGTGTCTATAATTAAGGAAGAGGATTGGCATGGTAATTTGAAAAAGGGGCAAATAATTGATTATGGAGAAGCTGTTGTCATGCCTGGCTTGATT GATGTGCATGCACATCTTAATGATCCGGGAAGAACTGAATGGGAGGGGTTTCCTTCTGGGACTAGAGCAGCTGCTGCTGGTGGTATTACAACATTGATTG ACATGCCTTTGAATAATTTTCCCGCAACTGTTTCTGCAGAAACTCTAAAACTCAAGATTGACGCTGCAGAGAAGAACATCTACGTTGATGTTGGTTTTTG GGGAGGTCTTGTTCCTGAAAATGCATTCGATGCAAATTCTCTAGAAGCCCTCCTAAGTGCCGGTGCTCTTGGTTTGAAGTCTTTCATGTGTCCTTCGGGG ATCAATGACTTCCCAATGACCAATTCCAGTCATATCAAGGAGGGACTATCTATACTGGCAAAGTACAGAAGACCTTTACTTGTACATGCAGAGATTCCCC AAGATTCTGAAAGCCACTTAGAAAACGGTGAAAATGACCCTCGATCTTATTCAACATACCTTAAGACAAGGCCACCATCATGGGAGGAGGCAGCGATTAG AGAGCTCTTGACAGTGTCCAAGGACACTAGGATCGGTGGTCCTGCCGAAGGAGCTCATCTTCATGTTGTTCATTTGTCCGATGCAGGTTCCTCCCTCCAG CTTCTAAAGGAAGCAAAAAGTAATGGTGACAGCGTAACTGTTGAGACATGTCCCCATTACCTAGCCTTTTCGGCAGAAGAGATTAAGGATGGAGACACTT GTTTTAAATGTGCTCCACCAATCCGTGACGCAGCTAATAAAGAAAGATTATGGACGGCTCTATTGGAAGGTGACATCGACATGTTAAGTTCTGATCATTC ACCATCAGTTCCTGATCTTAAACTCTTCGATGAAGGTAACTTTTTGAAGGCTTGGGGTGGCATATCTTCTTTGCAGTTTGTTCTTCCTGTGACATGGTCA CATGGACGGCAATATGGTGTCACTCTGGAACAGCTGGCTTTGTGGTGGAGTGAAAGGCCTGCCAAGCTTGCTGGGCAGGATTTGAAGGGGGCCATTGCAG TAGGAAACCATGCAGACATTACGGTATGGGAGCCAAATGTGGAGTTTGAGCTCAACAATGATCTTCCTGTTTACCTTAAACATCCTAGTATCTCAGCCTA CATGGGAAGCAAACTTTCTGGAAAAGTTATGTCAACATTTGTCAGAGGAAACCTGGTCTACAAAGAGGGAAAGCACGCTCCTGCTGCTTGTGGTGCTCCT ATCTTAGCTACATAA
AA sequence Show only first row Show all	>Potri.004G041800.1 pacid=42796213 polypeptide=Potri.004G041800.1.p locus=Potri.004G041800 ID=Potri.004G041800.1.v4.1 annot-version=v4.1 MDYLQLRVLPLLALLASLIYFFYFQDSPTLFERSDCSLFPYNHYWIISKRIVTPHGVISGAVEVKEEKIVSIIKEEDWHGNLKKGQIIDYGEAVVMPGLI DVHAHLNDPGRTEWEGFPSGTRAAAAGGITTLIDMPLNNFPATVSAETLKLKIDAAEKNIYVDVGFWGGLVPENAFDANSLEALLSAGALGLKSFMCPSG INDFPMTNSSHIKEGLSILAKYRRPLLVHAEIPQDSESHLENGENDPRSYSTYLKTRPPSWEEAAIRELLTVSKDTRIGGPAEGAHLHVVHLSDAGSSLQ LLKEAKSNGDSVTVETCPHYLAFSAEEIKDGDTCFKCAPPIRDAANKERLWTALLEGDIDMLSSDHSPSVPDLKLFDEGNFLKAWGGISSLQFVLPVTWS HGRQYGVTLEQLALWWSERPAKLAGQDLKGAIAVGNHADITVWEPNVEFELNNDLPVYLKHPSISAYMGSKLSGKVMSTFVRGNLVYKEGKHAPAACGAP ILAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04955		ATALN	allantoinase (.1)		Potri.004G041800 [exp]	0	1
AT3G58180			ARM repeat superfamily protein...		Potri.002G041400 [exp]	5.47	0.7909
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.009G021200 [exp]	7.21	0.7947
AT3G24150			unknown protein		Potri.018G128700 [exp]	13.74	0.7765
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.011G118000 [exp]	15.49	0.7858
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Potri.016G003200 [exp]	16.94	0.7843
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	21.44	0.7924
AT5G24650			Mitochondrial import inner mem...		Potri.012G004600 [exp]	32.86	0.7598
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076000 [exp]	39.30	0.7512
AT2G40600			appr-1-p processing enzyme fam...		Potri.013G092700 [exp]	40.79	0.7269
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.010G206900 [exp]	41.71	0.7363

Compare expression of checked genes

Potri.004G041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.