Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65070 924 / 0 DNA mismatch repair protein MutS, type 2 (.1.2) AT5G54090 266 / 2e-76 DNA mismatch repair protein MutS, type 2 (.1) AT3G24320 89 / 9e-18 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT4G25540 77 / 4e-14 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G02070 72 / 2e-12 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G18524 69 / 1e-11 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 69 / 2e-11 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G24495 67 / 6e-11 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005000 [exp] 256 / 2e-72 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Potri.010G065000 [exp] 88 / 2e-17 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.015G142900 [exp] 74 / 5e-13 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.001G156200 [exp] 71 / 3e-12 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.012G060000 [exp] 70 / 5e-12 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.014G121701 [exp] 69 / 2e-11 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G156314 [exp] 66 / 1e-10 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 66 / 1e-10 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025647 [exp] 1113 / 0 AT1G65070 892 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10018187 [exp] 1110 / 0 AT1G65070 899 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10032917 [exp] 255 / 4e-72 AT5G54090 808 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10015589 [exp] 244 / 9e-68 AT5G54090 791 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10014462 [exp] 86 / 1e-16 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10023718 [exp] 82 / 1e-15 AT3G24320 1594 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10027452 [exp] 77 / 2e-14 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10005743 [exp] 77 / 6e-14 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10017724 [exp] 75 / 2e-13 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10042967 [exp] 69 / 1e-11 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Potri.004G041900.3 pacid=42794990 polypeptide=Potri.004G041900.3.p locus=Potri.004G041900 ID=Potri.004G041900.3.v4.1 annot-version=v4.1 ATGGAACTCTCCAATCACTTCATATCCATTAAAAAATCCCCGATTCTCTTCTTCACCACCAAACCACCCTTCTCCACCAAAGCCCTAACAAAACCCTTTG ATTCACACTCACCGAAACTCACTTCTCCAGCTCACTCACTCCAACTCGAAACCCTTAAAATCCTAGAATGGAGTTCCCTCTGTAACCAACTCACTCCCTT CACTTCAACTTCGATGGGCCAATCGATCACTCGAAACGCAAAAATCCCAATTGGCAAGAGCAAAGAAGAGAGCCAGAAGCTTCTAGACCAGACTGCAGCT GCATTGGCTGTGATGGAATCTGGACCGTTGGATTTTTCAGGGATTGAGGATATAACGCGTATTCTGGATTCTGCTGTTTCGGGGACCTTGCTTACGGTTG GAGAATTATGTGCTGTGAGAAGGACGTTGAGAGCTGCTAGAGCTGTGTTGGAGAGGTTAAAAGATAGTGGAGATTGCTCGGAGAGGATCTCATCGATCTT GTTGTCTTTGAATAGGTATGCTCCACTGCTTGAAATACTTCAGAATTGCAGTTTTCAAATAGAGTTGGAGAAGAAAGTTGGATTTTGCATAGACTGCAAT CTTTCAAAAATCCTTGATAGGGCCAGTGAAGATTTGGAGATCATTAGGTCTGAAAGGAAGAGAAACATGGAAAATCTGGATAGGCTGTTGAAGGGAATAT CAGCTCGGATTTTTCAAGCTGGGGGTATCGACAAACCTTTGGTAACGAAGCGCCGCTCCCGGTTGTGTGTGGGAGTCAGGGCTTCTCACAGATATTTGAT TCCAGATGGTGTTGTTTTAAATGTTAGCAGTTCTGGTGTAACATACTTTATGGAGCCTGGTGAGGCAGTTGAATTGAATAACTTGGAAGTCATGCTTTCA GACTCTGAGAAAGCTGAGGAAATAGCCATTTTGAGCTTGCTTACATCTGAAATAGCAGAATCAGCAAGGGACATAAAATATATGTTGGATGGAATTATAG AAGTTGATCTTTCTTTTGCTAGAGCTGCTTATGCTTACTGGATGAATGGGGTCCGTCCAATATGGACTTCAGAGGGATGTGGAGGCATTTCTTCCAGTGG AGGAGATTATTTATTATCAATAGATATTGAAGGTATACGACACCCATTGCTCAATGGGACATCTAGAAAACGCCTGTCCAATATTCTTGGATCCAACTCT TTGAATTCCATGGAGGTGGATGAGGATAGCATGCTAGATACCGGAAAACCTTCCAAAAATGTATCTGAATTTCCTGTGCCAATAAACATTAAAGTGGAAT GTGGAACCAGAGTGGTTGTGATATCAGGACCAAACACTGGAGGGAAAACTGCTTCAATGAAAACTCTAGGTGTGGCATCTCTCATGTCAAAGGCTGGTTT ATATTTGCCTGCTAAAAACACCCCAAAGCTTCCATGGTTTGATTTTGTTCTAGCAGATATTGGGGACCACCAGTCTCTGGAACAAAATCTCTCAACTTTT AGCGGGCACATATCACGGATTTGTAAGATCTTGGAAGTGGCTTCAAATGAATCACTTGTCCTCGTTGATGAAATTTGTAGTGGAACTGATCCTTCTGAGG GAGTGGCACTTTCAACCAGTATCTTGCATTATCTGAGAGATCATGTTAACTTAGCTGTTGTGACAACTCATTATGCTGATTTAAGTCTCCTGAAAGATAA GGATAGTCGATTTGAGAATGCAGCCATGGAATTTTCTCTTGAAACATTACAACCTACGTATCAGATACTCTGGGGGTGTACTGGTGATTCAAATGCATTA AGCATTGCTAAATCAATTGGTTTTGACAGTAATATAATTGAACGAGCACGGAAGTGGGTGGAGAAGTTAGTTCCTGAAAAGCAGCAAGAGCGAAGTGGCA TGCTGTATCAATCATTGTTGGAGGAAAGAAACAGATTGGAAGCTCAGGCCAGGAAAGGTGCATCTCTTCATACAGAAATTATGGAGCTTTACCATGAGAT TCAAGCTGAATCTGAAGACCTTGATGGGCGTGTAAAAGCTCTCATGGCAAAGGAAACCCAACTGGTCCAACTGGAACTGAAGGCTGCAAACTCGCAGATT GAAACTGTGGTGCAGAATGTTGAAACTCAGCTCAGAAAAGCCAGTCCAGATCAGTTCAATTCACTGATTAAGAAATCAGAATCTGCAATTGCATCTATTG TTGAAGCTCACTGCTCAAGTGACAGTCTTCCTGCCAGTGAAACAGATACGAGCTCATATACCCCACAACTTGGGGAGCAAGTTCTTGTAAAGAGACTTGG AAACAAGTTAGCTACTGTAGTTGAAGCACCTCGTGATGATGAGACAGTCTTAGTTCAATATGGTAAAATAAGAGTTCGAATGAAGAAAAGTGACATTAGA GCAATTAAAAGTGATAAAAAAAGCAAAGCAACCATTTTGGTCCCTAGTTTGAAGAGACAGGTAAAGCAGAGTTTTTCAGAGCTCAACAAAGATGAGGAGG TTTCTCATGGCCCACGAGTGCAGACATCAAAGAACACTGTGGATCTGCGAGGCATGCGAGTGGAAGAAGCTGCTCAGCACCTCAACATGGCCATATCTGC AAGAGAGCCGCTCTCAGTTATTTTTGTTGTGCATGGCATGGGCACTGGAGCTGTTAAGGAGGGCGCACTGGAGGTACTAGGTAAGCATCCACGTGTTGCC AAATATGAACCAGAAAGTCCAATGAATTTTGGTTGTACAGTTGCTTATATCAAGTGA
AA sequence Show only first row Show all	>Potri.004G041900.3 pacid=42794990 polypeptide=Potri.004G041900.3.p locus=Potri.004G041900 ID=Potri.004G041900.3.v4.1 annot-version=v4.1 MELSNHFISIKKSPILFFTTKPPFSTKALTKPFDSHSPKLTSPAHSLQLETLKILEWSSLCNQLTPFTSTSMGQSITRNAKIPIGKSKEESQKLLDQTAA ALAVMESGPLDFSGIEDITRILDSAVSGTLLTVGELCAVRRTLRAARAVLERLKDSGDCSERISSILLSLNRYAPLLEILQNCSFQIELEKKVGFCIDCN LSKILDRASEDLEIIRSERKRNMENLDRLLKGISARIFQAGGIDKPLVTKRRSRLCVGVRASHRYLIPDGVVLNVSSSGVTYFMEPGEAVELNNLEVMLS DSEKAEEIAILSLLTSEIAESARDIKYMLDGIIEVDLSFARAAYAYWMNGVRPIWTSEGCGGISSSGGDYLLSIDIEGIRHPLLNGTSRKRLSNILGSNS LNSMEVDEDSMLDTGKPSKNVSEFPVPINIKVECGTRVVVISGPNTGGKTASMKTLGVASLMSKAGLYLPAKNTPKLPWFDFVLADIGDHQSLEQNLSTF SGHISRICKILEVASNESLVLVDEICSGTDPSEGVALSTSILHYLRDHVNLAVVTTHYADLSLLKDKDSRFENAAMEFSLETLQPTYQILWGCTGDSNAL SIAKSIGFDSNIIERARKWVEKLVPEKQQERSGMLYQSLLEERNRLEAQARKGASLHTEIMELYHEIQAESEDLDGRVKALMAKETQLVQLELKAANSQI ETVVQNVETQLRKASPDQFNSLIKKSESAIASIVEAHCSSDSLPASETDTSSYTPQLGEQVLVKRLGNKLATVVEAPRDDETVLVQYGKIRVRMKKSDIR AIKSDKKSKATILVPSLKRQVKQSFSELNKDEEVSHGPRVQTSKNTVDLRGMRVEEAAQHLNMAISAREPLSVIFVVHGMGTGAVKEGALEVLGKHPRVA KYEPESPMNFGCTVAYIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65070			DNA mismatch repair protein Mu...		Potri.004G041900 [exp]	0	1
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.019G019300 [exp]	2.00	0.9222
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	6.00	0.8962
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.011G053900 [exp]	9.16	0.8691
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014300 [exp]	16.24	0.8548
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.010G015200 [exp]	21.49	0.8194
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	22.13	0.8365	Pt-KUP3.1
AT5G24690			Protein of unknown function (D...		Potri.001G210500 [exp]	22.44	0.8320
AT5G38200			Class I glutamine amidotransfe...		Potri.017G118551 [exp]	23.91	0.7705
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.011G144300 [exp]	31.46	0.8635
AT2G28605			Photosystem II reaction center...		Potri.005G068500 [exp]	40.53	0.8091

Compare expression of checked genes

Potri.004G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.