Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15390 271 / 2e-85 SDE5 silencing defective 5 (.1.2) AT5G58720 102 / 3e-23 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G051300 [exp] 726 / 0 AT3G15390 271 / 5e-85 silencing defective 5 (.1.2) Potri.001G401900 [exp] 308 / 6e-99 AT3G15390 273 / 2e-85 silencing defective 5 (.1.2) Potri.009G046300 [exp] 113 / 1e-26 AT5G58720 418 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018188 [exp] 360 / 2e-119 AT3G15390 241 / 1e-73 silencing defective 5 (.1.2) Lus10025646 [exp] 212 / 3e-63 AT3G15390 159 / 6e-44 silencing defective 5 (.1.2) Lus10018236 [exp] 88 / 4e-18 AT5G58720 417 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10040668 [exp] 74 / 9e-14 AT5G58720 416 / 1e-140 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [poplar] [flax] DUF1771 Domain of unknown function (DUF1771)
Representative CDS sequence Show only first row Show all	>Potri.004G042100.13 pacid=42795408 polypeptide=Potri.004G042100.13.p locus=Potri.004G042100 ID=Potri.004G042100.13.v4.1 annot-version=v4.1 ATGGAAGTATCTGCTTCAAACATTTTGAAATGCGATGATGAGGAAAAGGCTTTGAAGGGCTTGCTTGAAGCATTTGGTGCTGAATTTTCTCTTGAACAAA TAGCTTCTGCTTACTGCAAAGCAGGCCGAAATGCAGATTTTTCTGTTCAAATCCTGCTAGATATGGAGGGAAGTTCCCCTACCTCTTCAAGTCATTCATC CATTGGAGAGGCAATGGAGAATCAAAAATCTTCTGAGTCATCCAATGATTATATTCCGAAGAAGAAGTGTGATGCAAATGAAAAGTTCAAAACTGTAAAG CAAAAATGGCATCCGGTATCAGGAGGAACTGTTTCAAGTGTTCTCGGTAAAAGTTACATTACATCCATGCCAGTGGCCAATAGCTCTTGTGTGGCAACCA AACCATTGAAATTGGATGCACAGGAGTTCCCGATGTCTGAACTTTGGGGAGAAGAACCCAAACAAACCCAATCAAAGCATGACCATATGCACAAGGATAT GGAAGATTTTTTATTCAACATGCTAGGAGATGGCTTCCAGCTGGAAAGGGGCGTGATTCAACAAGTTCTTGATGCATGTGGATATGATATGGAAAAGAGC ATGGAGGAACTACTCAATCTGTCAGGAGTGATTTCGGACAAAAGTAACAAATATTTCACAGATGTACAGTCAAATTATGGAAGACCTTCATGTAAAAAAA ATTTGCAATCGATGAGTTCCCATGGAGGAATTTCAAATGCAAATCGGGGAGAATTACCTGGGCTGGGGAAAGAGAGAAACAACCTCCAGAATGAAGTTTT GACTGCACTTTTTAGTGCTGCTGAGAGATCTGAGGAGTTATCTAGAAGAAAAACAAAGGCTGAACGGAGGTCGATAGTATATGGAGAGCCGGTGGCTGAA CCTCTAACAGACTTTACCTTAGAGAACAAGGCTGATTCAGTGTACTCCCAGCAAGATTATGACAAAGTATCATCAGTTGAAGATAAGGATGGAGAGGATA GTTACCAGCTTCTTCGTAAAGCTTGGAAGGAGTATCGGGCTACAATGAATGAATATTACAAAGCTGGTGGTGATGCATTTGCCAAAGGAGATTATGAGCG AGCAAACAAACTTATGGATGAGGGACTTTTTTTTCGTGACAAGGCTCACGAGGTAGATGAAGAATCTACTCAGAAGATTTTTGAAAGCAAAAATGTTGAG ACACAAGACGAGATGTTGCTTGATCTACATGAATATGGCACGAAAGATGCAATACGCTCCTTGAGGAGTAACCTTCTCTTACTTTCAGGCATCCCATCTT TCAAGTACCTCAAAGTCATCATCGAGTCGAACAAGGAAGACGTTACGAAAAGGGATGTGACGAAAGGGGCTCGTAGAAGATTGATCATGAAGCTATTAGA GAAGGAATCAATCGAGTGGACTGAAGGAGATATTGGAACAATACTAATTCAACTGGATAATATCAACCCAAAGCGCTTGAGTTTCGCCAAAAAATAG
AA sequence Show only first row Show all	>Potri.004G042100.13 pacid=42795408 polypeptide=Potri.004G042100.13.p locus=Potri.004G042100 ID=Potri.004G042100.13.v4.1 annot-version=v4.1 MEVSASNILKCDDEEKALKGLLEAFGAEFSLEQIASAYCKAGRNADFSVQILLDMEGSSPTSSSHSSIGEAMENQKSSESSNDYIPKKKCDANEKFKTVK QKWHPVSGGTVSSVLGKSYITSMPVANSSCVATKPLKLDAQEFPMSELWGEEPKQTQSKHDHMHKDMEDFLFNMLGDGFQLERGVIQQVLDACGYDMEKS MEELLNLSGVISDKSNKYFTDVQSNYGRPSCKKNLQSMSSHGGISNANRGELPGLGKERNNLQNEVLTALFSAAERSEELSRRKTKAERRSIVYGEPVAE PLTDFTLENKADSVYSQQDYDKVSSVEDKDGEDSYQLLRKAWKEYRATMNEYYKAGGDAFAKGDYERANKLMDEGLFFRDKAHEVDEESTQKIFESKNVE TQDEMLLDLHEYGTKDAIRSLRSNLLLLSGIPSFKYLKVIIESNKEDVTKRDVTKGARRRLIMKLLEKESIEWTEGDIGTILIQLDNINPKRLSFAKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15390		SDE5	silencing defective 5 (.1.2)		Potri.004G042100 [exp]	0	1
AT2G27460			sec23/sec24 transport family p...		Potri.009G163300 [exp]	18.54	0.7043
AT4G31080			Protein of unknown function (D...		Potri.006G281400 [exp]	25.69	0.6605
AT5G53620			unknown protein		Potri.012G023200 [exp]	27.27	0.6964
AT4G17080			Histone H3 K4-specific methylt...		Potri.014G052300 [exp]	34.49	0.6846
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	39.82	0.6750
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G013600 [exp]	65.95	0.6736
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Potri.014G108100 [exp]	68.49	0.6565	NAC097
AT2G35530	bZIP	AtbZIP16	basic region/leucine zipper tr...		Potri.001G136000 [exp]	71.29	0.6765
AT5G07610			F-box family protein (.1)		Potri.008G016150 [exp]	91.73	0.6708
AT5G06440			unknown protein		Potri.006G201000 [exp]	98.15	0.6575

Compare expression of checked genes

Potri.004G042100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.