Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04950 750 / 0 AtGRXS17 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) AT4G32580 220 / 6e-70 Thioredoxin superfamily protein (.1) AT3G54900 113 / 3e-29 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting protein 1 (.1) AT3G15660 112 / 7e-29 ATGRX4 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) AT2G38270 111 / 3e-27 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting protein 2 (.1) AT3G17880 74 / 4e-14 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT3G56420 67 / 4e-13 Thioredoxin superfamily protein (.1) AT1G11530 64 / 2e-12 ATCXXS1 C-terminal cysteine residue is changed to a serine 1 (.1) AT3G51030 61 / 4e-11 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT2G40790 61 / 5e-11 ATCXXS2 C-terminal cysteine residue is changed to a serine 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G051400 [exp] 917 / 0 AT4G04950 680 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.014G141200 [exp] 125 / 1e-33 AT3G54900 197 / 5e-65 GLUTAREDOXIN, CAX interacting protein 1 (.1) Potri.003G060600 [exp] 105 / 1e-26 AT3G15660 201 / 7e-67 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Potri.016G119200 [exp] 104 / 8e-25 AT2G38270 393 / 2e-138 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Potri.005G232700 [exp] 74 / 9e-16 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.012G045000 [exp] 77 / 3e-15 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.004G031700 [exp] 67 / 4e-13 AT1G11530 179 / 1e-59 C-terminal cysteine residue is changed to a serine 1 (.1) Potri.015G036000 [exp] 70 / 1e-12 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.019G062000 [exp] 66 / 2e-12 AT3G08710 164 / 6e-53 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011187 [exp] 335 / 2e-114 AT4G04950 322 / 8e-110 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10011188 [exp] 317 / 8e-107 AT4G04950 297 / 1e-99 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10018487 [exp] 304 / 8e-102 AT4G04950 280 / 5e-93 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10018486 [exp] 204 / 3e-64 AT4G04950 195 / 2e-61 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10041501 [exp] 105 / 1e-25 AT3G54900 159 / 4e-49 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10012592 [exp] 102 / 5e-25 AT3G54900 156 / 2e-48 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10002847 [exp] 103 / 3e-24 AT2G38270 384 / 4e-135 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Lus10008687 [exp] 96 / 4e-21 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10007630 [exp] 67 / 3e-13 AT1G11530 143 / 4e-45 C-terminal cysteine residue is changed to a serine 1 (.1) Lus10018383 [exp] 65 / 2e-12 AT1G11530 145 / 3e-46 C-terminal cysteine residue is changed to a serine 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Potri.004G042200.1 pacid=42795906 polypeptide=Potri.004G042200.1.p locus=Potri.004G042200 ID=Potri.004G042200.1.v4.1 annot-version=v4.1 ATGGGTGGGTCAGTGAAGGACGTGAAATCAAAGGCTGAACTTGATAACATAACCAAAAGTGAAGAAGCAGTGATCATTCACTTCTGGGCAACATGGTGTG ATGCTTCAAAACAAATGGACCAAGTCTTTTCTCATCTCTCCACTGATTTCCCCAAGACCCACTTTCTCAGGGTTGAAGCAGAGGAGCAACCAGAGATATC AGAGGCCTTTTCAGTCTCTTCTGTGCCTTATTTTGTTTTCTTGAAGGATGGCAAGACAGTTGATACATTGGAAGGTGCAGATCCTTCCAGTTTGGCAAAC AAAGTTGCTAAAGTTGCTGGCTCAGCTAACCCAGGAGAACCTGCAGCCCCTGCCAGCCTTGGAATGGCTGCTGGACCTACTGTTCTTGAAACAGTCAAAG AGTTCACCAAAGAAAATGGCTCCTCACAACAAGCAAACCAAGTGCAACCTGGCCTGAGTGATGCATTAAAAAATCAATTGCAGCAGTTGATTGGCTCTCA TCCTGTCATGCTATTCATGAAAGGGAATGCTGAAGCGCCTAAGTGTGGGTTTAGCCGAAAAGTTGTTGATATTTTGAAGGGTGAAAATGTGAAATTTGGA ACTTTTGATATCCTCTCTGACATTGAGGTTCGTGAGGGGTTGAAGTTGTTCTCGAACTGGCCCACATTTCCTCAGCTCTACTGCAAGGGAGAGCTTCTTG GCGGATGTGACATCGTAATTGCAATGCATGAGAGTGGTGAATTAAAAGAAGTTTTCAGAGACCATGGAATTGATACTATTGGTTCCAATGAGGCAAAAGT GAGTGGAAGTGAAAATGGAAAGGGTGGCATTGCACAATCCACTGGATTGAGTATGACCTTGACCTCCAGACTTGAAAGCCTGGTTAATTCAAGCCCAGTT ATGTTGTTTATGAAGGGAAAACCTACTGAACCAAAGTGTGGTTTCAGTGGGAAGGTAGTTGAAATCCTTCGAGAGGAAAAGGTGAAGTTTGAGACCTTTG ATATTCTCACCGATGAAGAAGTCCGTCAGGGGCTTAAAGTTTATTCCAACTGGTCTAGTTACCCTCAACTGTACATCAAAGGTGAACTTATTGGTGGATC AGACATTGTGCTGGAGATGCAGAAAAGTGGGGAACTTAAAAAGGTTTTGATTGAGAAAGGTATTGTTCAGAAGGAGACCATAGAAGATCGCATAAAGAGC CTGATTACTTCTTCACCAGTGATCCTCTTCATGAAGGGTACCCCAGATGCCCCCAGATGTGGTTTCAGTTCCAAAGTTGTAAATGCCCTGAAGGAGGAGG GTGTAAGTTTTGAGTCCTTTGACATTTTATCAGATGAGGAAGTGAGGCAGGGACTAAAGGTCTTCTCAAATTGGCCAACCTTTCCTCAGCTTTATTACAA AGGTGAGCTAATAGGTGGTTGTGATATTATAATGGAGCTGCGAGACAACGGAGAACTGAAATCTACCCTATCCGAGTAG
AA sequence Show only first row Show all	>Potri.004G042200.1 pacid=42795906 polypeptide=Potri.004G042200.1.p locus=Potri.004G042200 ID=Potri.004G042200.1.v4.1 annot-version=v4.1 MGGSVKDVKSKAELDNITKSEEAVIIHFWATWCDASKQMDQVFSHLSTDFPKTHFLRVEAEEQPEISEAFSVSSVPYFVFLKDGKTVDTLEGADPSSLAN KVAKVAGSANPGEPAAPASLGMAAGPTVLETVKEFTKENGSSQQANQVQPGLSDALKNQLQQLIGSHPVMLFMKGNAEAPKCGFSRKVVDILKGENVKFG TFDILSDIEVREGLKLFSNWPTFPQLYCKGELLGGCDIVIAMHESGELKEVFRDHGIDTIGSNEAKVSGSENGKGGIAQSTGLSMTLTSRLESLVNSSPV MLFMKGKPTEPKCGFSGKVVEILREEKVKFETFDILTDEEVRQGLKVYSNWSSYPQLYIKGELIGGSDIVLEMQKSGELKKVLIEKGIVQKETIEDRIKS LITSSPVILFMKGTPDAPRCGFSSKVVNALKEEGVSFESFDILSDEEVRQGLKVFSNWPTFPQLYYKGELIGGCDIIMELRDNGELKSTLSE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.004G042200 [exp]	0	1
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Potri.007G127500 [exp]	2.82	0.8502	FTA.1
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Potri.001G258000 [exp]	12.84	0.8371
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.002G187200 [exp]	14.14	0.8563
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.006G275300 [exp]	14.69	0.8144	FZF.2
AT2G47790			Transducin/WD40 repeat-like su...		Potri.002G205600 [exp]	18.33	0.7921
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	22.51	0.8443	CHC901
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Potri.001G113250 [exp]	26.83	0.8435
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.005G074900 [exp]	29.59	0.7494	Pt-UBP3.2
AT5G67630			P-loop containing nucleoside t...		Potri.006G118900 [exp]	32.61	0.8137
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.006G110100 [exp]	33.46	0.8305

Compare expression of checked genes

Potri.004G042200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.